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Design and analysis of a Proportional-Integral-Derivative controller with biological molecules

Michael Chevalier, View ORCID ProfileMariana Gómez-Schiavon, Andrew Ng, Hana El-Samad
doi: https://doi.org/10.1101/303545
Michael Chevalier
1Department of Biochemistry and Biophysics, California Institute for Quantitative Biosciences, University of California San Francisco, United States of America
4Co-first author
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Mariana Gómez-Schiavon
1Department of Biochemistry and Biophysics, California Institute for Quantitative Biosciences, University of California San Francisco, United States of America
4Co-first author
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  • ORCID record for Mariana Gómez-Schiavon
Andrew Ng
1Department of Biochemistry and Biophysics, California Institute for Quantitative Biosciences, University of California San Francisco, United States of America
2Department of Bioengineering, University of California Berkeley, United States of America
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Hana El-Samad
1Department of Biochemistry and Biophysics, California Institute for Quantitative Biosciences, University of California San Francisco, United States of America
3Chan-Zuckerberg Biohub, United States of America
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  • For correspondence: Hana.El-Samad@ucsf.edu
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Summary

The ability of cells to regulate their function through feedback control is a fundamental underpinning of life. The capability to engineer de novo feedback control with biological molecules is ushering in an era of robust functionality for many applications in biotechnology and medicine. To fulfill their potential, feedback control strategies implemented with biological molecules need to be generalizable, modular and operationally predictable. Proportional-Integral-Derivative (PID) control fulfills this role for technological systems and is a commonly used strategy in engineering. Integral feedback control allows a system to return to an invariant steady-state value after step disturbances, hence enabling its robust operation. Proportional and derivative feedback control used with integral control help sculpt the dynamics of the return to steady-state following perturbation. Recently, a biomolecular implementation of integral control was proposed based on an antithetic motif in which two molecules interact stoichiometrically to annihilate each other’s function. In this work, we report how proportional and derivative implementations can be layered on top of this integral architecture to achieve a biochemical PID control design. We illustrate through computational and analytical treatments that the addition of proportional and derivative control improves performance, and discuss practical biomolecular implementations of these control strategies.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted April 18, 2018.
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Design and analysis of a Proportional-Integral-Derivative controller with biological molecules
Michael Chevalier, Mariana Gómez-Schiavon, Andrew Ng, Hana El-Samad
bioRxiv 303545; doi: https://doi.org/10.1101/303545
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Design and analysis of a Proportional-Integral-Derivative controller with biological molecules
Michael Chevalier, Mariana Gómez-Schiavon, Andrew Ng, Hana El-Samad
bioRxiv 303545; doi: https://doi.org/10.1101/303545

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