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Correction of respiratory artifacts in MRI head motion estimates

Damien A. Fair, View ORCID ProfileOscar Miranda-Dominguez, Abraham Z. Snyder, Anders Perrone, Eric A. Earl, Andrew N. Van, Jonathan M. Koller, Eric Feczko, Rachel L. Klein, Amy E. Mirro, Jacqueline M. Hampton, Babatunde Adeyemo, Timothy O. Laumann, Caterina Gratton, Deanna J. Greene, Bradley L. Schlaggar, Don Hagler, Richard Watts, Hugh Garavan, Deanna M. Barch, Joel T. Nigg, Steven E. Petersen, Anders Dale, Sarah W. Feldstein-Ewing, Bonnie J. Nagel, Nico U.F. Dosenbach
doi: https://doi.org/10.1101/337360
Damien A. Fair
5Department of Behavioral Neuroscience, Oregon Health & Science University, Portland, OR, USA
6Department of Psychiatry, Oregon Health & Science University, Portland, OR, USA
8Advanced Imaging Research Center, Oregon Health & Science University, Portland, OR, USA
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  • For correspondence: faird@ohsu.edu ndosenbach@wustl.edu
Oscar Miranda-Dominguez
5Department of Behavioral Neuroscience, Oregon Health & Science University, Portland, OR, USA
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  • ORCID record for Oscar Miranda-Dominguez
Abraham Z. Snyder
1Department of Neurology, Washington University School of Medicine, St. Louis, MO, USA
7Department of Radiology, Washington University School of Medicine, St. Louis, MO, USA
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Anders Perrone
5Department of Behavioral Neuroscience, Oregon Health & Science University, Portland, OR, USA
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Eric A. Earl
5Department of Behavioral Neuroscience, Oregon Health & Science University, Portland, OR, USA
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Andrew N. Van
1Department of Neurology, Washington University School of Medicine, St. Louis, MO, USA
2Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA
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Jonathan M. Koller
4Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA
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Eric Feczko
5Department of Behavioral Neuroscience, Oregon Health & Science University, Portland, OR, USA
14Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland OR, USA
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Rachel L. Klein
6Department of Psychiatry, Oregon Health & Science University, Portland, OR, USA
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Amy E. Mirro
1Department of Neurology, Washington University School of Medicine, St. Louis, MO, USA
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Jacqueline M. Hampton
1Department of Neurology, Washington University School of Medicine, St. Louis, MO, USA
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Babatunde Adeyemo
1Department of Neurology, Washington University School of Medicine, St. Louis, MO, USA
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Timothy O. Laumann
1Department of Neurology, Washington University School of Medicine, St. Louis, MO, USA
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Caterina Gratton
1Department of Neurology, Washington University School of Medicine, St. Louis, MO, USA
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Deanna J. Greene
4Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA
7Department of Radiology, Washington University School of Medicine, St. Louis, MO, USA
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Bradley L. Schlaggar
1Department of Neurology, Washington University School of Medicine, St. Louis, MO, USA
2Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA
4Department of Psychiatry, Washington University School of Medicine, St. Louis, MO, USA
7Department of Radiology, Washington University School of Medicine, St. Louis, MO, USA
9Department of Neuroscience, Washington University School of Medicine, St. Louis, MO, USA
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Don Hagler
10Department of Radiology, University of California, San Diego, La Jolla, CA, USA
11Department of Neurosciences, University of California, San Diego, La Jolla, CA, USA
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Richard Watts
13Department of Psychiatry, University of Vermont, Burlington, VT, USA
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Hugh Garavan
13Department of Psychiatry, University of Vermont, Burlington, VT, USA
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Deanna M. Barch
12Department of Psychological & Brain Sciences, Washington University, St. Louis, MO, USA
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Joel T. Nigg
5Department of Behavioral Neuroscience, Oregon Health & Science University, Portland, OR, USA
6Department of Psychiatry, Oregon Health & Science University, Portland, OR, USA
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Steven E. Petersen
1Department of Neurology, Washington University School of Medicine, St. Louis, MO, USA
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Anders Dale
10Department of Radiology, University of California, San Diego, La Jolla, CA, USA
11Department of Neurosciences, University of California, San Diego, La Jolla, CA, USA
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Sarah W. Feldstein-Ewing
6Department of Psychiatry, Oregon Health & Science University, Portland, OR, USA
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Bonnie J. Nagel
5Department of Behavioral Neuroscience, Oregon Health & Science University, Portland, OR, USA
6Department of Psychiatry, Oregon Health & Science University, Portland, OR, USA
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Nico U.F. Dosenbach
1Department of Neurology, Washington University School of Medicine, St. Louis, MO, USA
2Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA
3Program in Occupational Therapy, Washington University, St. Louis, MO, USA
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Abstract

Head motion represents one of the greatest technical obstacles for brain MRI. Accurate detection of artifacts induced by head motion requires precise estimation of movement. However, this estimation may be corrupted by factitious effects owing to main field fluctuations generated by body motion. In the current report, we examine head motion estimation in multiband resting state functional connectivity MRI (rs-fcMRI) data from the Adolescent Brain and Cognitive Development (ABCD) Study and a comparison ‘single-shot’ dataset from Oregon Health & Science University. We show unequivocally that respirations contaminate movement estimates in functional MRI and that respiration generates apparent head motion not associated with degraded quality of functional MRI. We have developed a novel approach using a band-stop filter that accurately removes these respiratory effects. Subsequently, we demonstrate that utilizing this filter improves post-processing data quality. Lastly, we demonstrate the real-time implementation of motion estimate filtering in our FIRMM (Framewise Integrated Real-Time MRI Monitoring) software package.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted June 07, 2018.
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Correction of respiratory artifacts in MRI head motion estimates
Damien A. Fair, Oscar Miranda-Dominguez, Abraham Z. Snyder, Anders Perrone, Eric A. Earl, Andrew N. Van, Jonathan M. Koller, Eric Feczko, Rachel L. Klein, Amy E. Mirro, Jacqueline M. Hampton, Babatunde Adeyemo, Timothy O. Laumann, Caterina Gratton, Deanna J. Greene, Bradley L. Schlaggar, Don Hagler, Richard Watts, Hugh Garavan, Deanna M. Barch, Joel T. Nigg, Steven E. Petersen, Anders Dale, Sarah W. Feldstein-Ewing, Bonnie J. Nagel, Nico U.F. Dosenbach
bioRxiv 337360; doi: https://doi.org/10.1101/337360
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Correction of respiratory artifacts in MRI head motion estimates
Damien A. Fair, Oscar Miranda-Dominguez, Abraham Z. Snyder, Anders Perrone, Eric A. Earl, Andrew N. Van, Jonathan M. Koller, Eric Feczko, Rachel L. Klein, Amy E. Mirro, Jacqueline M. Hampton, Babatunde Adeyemo, Timothy O. Laumann, Caterina Gratton, Deanna J. Greene, Bradley L. Schlaggar, Don Hagler, Richard Watts, Hugh Garavan, Deanna M. Barch, Joel T. Nigg, Steven E. Petersen, Anders Dale, Sarah W. Feldstein-Ewing, Bonnie J. Nagel, Nico U.F. Dosenbach
bioRxiv 337360; doi: https://doi.org/10.1101/337360

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