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Structure of the ciliary axoneme at nanometer resolution reconstructed by TYGRESS

Kangkang Song, Zhiguo Shang, Xiaofeng Fu, Xiaochu Lou, View ORCID ProfileNikolaus Grigorieff, View ORCID ProfileDaniela Nicastro
doi: https://doi.org/10.1101/363317
Kangkang Song
1Departments of Cell Biology and Biophysics, University of Texas Southwestern Medical School, Dallas, TX 75390, USA.
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Zhiguo Shang
1Departments of Cell Biology and Biophysics, University of Texas Southwestern Medical School, Dallas, TX 75390, USA.
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Xiaofeng Fu
1Departments of Cell Biology and Biophysics, University of Texas Southwestern Medical School, Dallas, TX 75390, USA.
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Xiaochu Lou
1Departments of Cell Biology and Biophysics, University of Texas Southwestern Medical School, Dallas, TX 75390, USA.
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Nikolaus Grigorieff
2Janelia Farm Research Campus, Howard Hughes Medical Institute, 19700 Helix Drive, Ashburn, VA 20147, USA.
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Daniela Nicastro
1Departments of Cell Biology and Biophysics, University of Texas Southwestern Medical School, Dallas, TX 75390, USA.
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  • ORCID record for Daniela Nicastro
  • For correspondence: daniela.nicastro@utsouthwestern.edu
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Abstract

The resolution of subtomogram averages calculated from cryo-electron tomograms (cryo-ET) of crowded cellular environments is often limited due to signal loss in, and misalignment of the subtomograms. In contrast, single-particle cryo-electron microcopy (SP-cryo-EM) routinely reaches near-atomic resolution of isolated complexes. We developed a novel hybrid-method called “TomographY-Guided 3D REconstruction of Subcellular Structures” (TYGRESS) that combines cryo-ET with SP-cryo-EM to achieve close-to-nanometer resolution of complexes inside crowded environments. Using TYGRESS, we determined the native 3D structures of the intact ciliary axoneme with up to 12 Å resolution. These results reveal many structures and details that were not visible by cryo-ET. TYGRESS is generally applicable to cellular complexes that are amenable to subtomogram averaging, bringing us a step closer to (pseudo-)atomic models of cells.

One Sentence Summary A hybrid cryo-electron microscopy method reveals subcellular structures at unprecedented resolution.

Footnotes

  • Abbreviation: Cryo-electron tomography: cryo-ET; Contrast transfer function: CTF; Doublet microtubules: DMTs; Inner dynein arms: IDAs; I1 tether/tether head: I1 T/TH; Inner junction: IJ; Microtubule-associated proteins: MAPs; Microtubule inner proteins: MIPs; Nexin-dynein regulatory complex: N-DRC; Outer dynein arms: ODAs; Protofilaments: PFs; Radial spokes: RSs; Single-particle cryo-EM: SP-cryo-EM; TomographY-Guided 3D REconstruction of Subcellular Structures, TYGRESS.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted July 06, 2018.
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Structure of the ciliary axoneme at nanometer resolution reconstructed by TYGRESS
Kangkang Song, Zhiguo Shang, Xiaofeng Fu, Xiaochu Lou, Nikolaus Grigorieff, Daniela Nicastro
bioRxiv 363317; doi: https://doi.org/10.1101/363317
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Structure of the ciliary axoneme at nanometer resolution reconstructed by TYGRESS
Kangkang Song, Zhiguo Shang, Xiaofeng Fu, Xiaochu Lou, Nikolaus Grigorieff, Daniela Nicastro
bioRxiv 363317; doi: https://doi.org/10.1101/363317

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