Abstract
The rhizobium-legume symbiotic system is crucial for nitrogen cycle balance in agriculture. Hydrogen sulfide (H2S), a gaseous signaling molecule, may regulate various physiological processes in plants. However, whether H2S has regulatory effect in this symbiotic system remains unknown. Herein, we investigated the possible role of H2S in the symbiosis between soybean (Glycine max) and rhizobium (Sinorhizobium fredii). Our results demonstrated that exogenous H2S donor (sodium hydrosulfide, NaHS) treatment promoted soybean growth, nodulation and nitrogenase (Nase) activity. Western blotting analysis revealed that the abundance of nitrogenase component nifH was increased by NaHS treatment in nodules. Quantitative real-time PCR data showed that NaHS treatment up-regulated the expressions of symbiosis-related genes nodC and nodD of S. fredii. Besides, expression of soybean nodulation marker genes including early nodulin 40 (GmENOD40), ERF required for nodulation (GmERN), nodulation signaling pathway2b (GmNSP2b) and nodulation inception genes (GmNIN1a, GmNIN2a and GmNIN2b) were up-regulated. Moreover, the expressions of glutamate synthase (GmGS), nitrite reductase (GmNiR), ammonia transporter (GmSAT1), and nifH involved in nitrogen metabolism were up-regulated in NaHS-treated soybean roots and nodules. Together, our results suggested that H2S may act as a positive signaling molecule in soybean-rhizobia symbiotic system and enhance their nitrogen fixation ability.
Highlight We demonstrated for the first time that H2S as a signaling molecule may promote the establishment of symbiotic relationship and nitrogen fixation ability in the soybean-rhizobia symbiotic system.
- Abbreviations
- Ci
- carbon dioxide concentration.
- Fm
- maximal fluorescence yield.
- Fo
- minimal fluorescence yield.
- Gs
- stomatal conductance.
- Pn
- photosynthetic rate.
- PSII
- photosystem II.
- qRT-PCR
- quantitative real-time PCR.
- Tr
- transpiration rate.
- Vpdl
- vapor pressure divicit.
Introduction
Symbiosis is ubiquitous in terrestrial, freshwater, and marine communities. It has played a key role in the emergence of major life forms on Earth, and in the generation of biological diversity (Moran, 2006). Among all plant-microorganism symbioses, mutualism between legumes and bacteria known as rhizobia, is the most well-studied (Caballero-Mellado & Martinez-Romero, 1999). Symbiotic infection by rhizobia into legume roots leads to the formation of a specialized organ known as root nodule in which rhizobia differentiate into nitrogen-fixing bacteroids (Mergaert et al., 2006). Root nodules not only create an optimized environment for nitrogen fixation, but also provide a site where substance exchange can take place in plants (Becana & Sprent, 1987). In exchange for atmospheric nitrogen fixed by bacteroids, legumes provide energy and carbon sources to the bacterial partner (Werner et al., 2015).
In recent years, overuse of nitrogen fertilizers aimed at increasing soybean (Glycine max) and other crop yields has led to widespread environmental problems (Tian et al., 2012). Counterproductively, nitrogen fertilizer overuse does not promote soybean production since the redundancy of inorganic nitrogen in the soil layer surrounding roots inhibits nodulation and biological nitrogen fixation (Tilman et al., 2002). This reduced the utilization efficiency of nitrogen fertilizers and caused acidification and hardening of soil, along with various environmental problems. Thus, enhancing the nitrogen-fixing ability of the soybean-rhizobia symbiotic system is a practical solution for reducing the overuse of nitrogen fertilizers and preventing subsequent environmental problems (Masclaux-Daubresse et al., 2010).
The establishment of symbiosis between plants and microorganisms involves a complex regulatory network that includes nitric oxide (NO) and reactive oxygen species (ROS) (Li et al., 2011; Fukuto et al., 2012; Oldroyd, 2013). NO is produced in functional root nodules and is crucial for the establishment of symbiosis between Medicago truncatula and Sinorhizobium meliloti (Baudouin et al., 2006; Del Giudice et al., 2011). The production of NO during the infection process indicates a role for this gaseous molecule in recognition between plants and their bacterial partners (Hichri et al., 2016). Similar findings reported by Pii et al. (2007) suggested that NO and auxins may control the formation of indeterminate nodules in M. truncatula. Meanwhile, NO is also crucial for the development of functional nodules in soybean, as demonstrated by Leach et al. (2010) using a NO synthase-specific inhibitor. Furthermore, ROS and NO may synergistically control the early stages of the formation of legume-rhizobia symbiosis (Damiani et al., 2016). Additionally, NO have a negative effect on nitrogenase (Nase) activity in plants (Meilhoc et al., 2010; Cam et al., 2012).
Recently, the role of hydrogen sulfide (H2S), as a signaling molecule, regulating physiological processes in plants has become a hot topic. In addition to participating in adventitious root and lateral root formation and seed germination (Zhang et al., 2008; Zhang et al., 2009; Lin et al., 2012), H2S is reportedly involved in alleviating oxidative damage caused by heavy metals such as aluminum, copper, boron, cadmium, and chromium (Zhang et al., 2008; Wang et al., 2010; Li et al., 2012; Chen et al., 2013; Sun et al., 2013; Fang et al., 2016). Moreover, H2S also acts as an antioxidant signaling molecule to modulate ROS and antioxidant levels, thereby improving drought tolerance in soybean (Zhang et al., 2010). Alternatively, H2S enhances the drought tolerance of plants by affecting the biosynthesis and expression levels of genes associated with polyamines and soluble sugars (Chen et al., 2016). H2S also appears to alleviate saline-induced stress responses in bermudagrass (Cynodon dactylon) (Shi et al., 2013). Shen et al. (2013) found that H2S conferred heat tolerance in Arabidopsis thaliana through affecting microRNA expression. Moreover, H2S regulates stomatal movements together with NO, abscisic acid and inward-rectifying K+ channels (García-Mata & Lamattina, 2010; Scuffi et al., 2014; Papanatsiou et al., 2015). Chen et al. (2011) reported that H2S promotes photosynthesis by increasing ribulose-1, 5-bisphosphate carboxylase activity, and through thiol redox modification in Spinacia oleracea. Other studies indicate a role for H2S in autophagy (Álvarez et al., 2012; Romero et al., 2014; Laureano-Marín et al., 2016). In both animals and plants, most H2S responses are related to, or mediated by, NO or ROS (Zhang et al., 2009; Li et al., 2013; Scuffi et al., 2014; Laureano-Marín et al., 2016). However, whether H2S exerts synergistic or similar functions in the formation of legume-rhizobia symbiosis remains unclear.
In the present study, we found that treatment with an H2S donor (sodium hydrosulfide, NaHS) promotes infection of S. fredii into soybean roots, and enhances the biological nitrogen fixation ability of the symbiotic system by up-regulating symbiosis and nitrogen fixation related genes and proteins. Stimulation of nitrogen fixation and metabolism led to enhanced nitrogen assimilation and photosynthesis in soybean plants, which eventually promoted plant growth. This is the first study to investigate the regulatory role of H2S in the legume-rhizobia symbiotic system, and our findings suggest H2S is a positive regulator in the establishment of symbiosis and symbiotic nitrogen fixation between G. max and S. fredii. This research will likely inspire future study of the role of H2S in plant physiology, and might offer a possible solution to increasing soybean production.
Materials and methods
Plant growth and H2S treatment
Soybean (Glycine max cv. Zhonghuang 13) seeds were surface-sterilized with 75% ethyl alcohol and sodium hypochlorite, then placed on a 1% agar plate for 72 h at 28°C in the dark. 800 ml of growth medium (vermiculite and perlite, v:v = 1:1) was watered with 400 ml nitrogen-free nutrient solution (100 mg/L CaCl2, 100 mg/L KH2PO4, 50 mg/L Ferric citrate, 150 mg/L NaH2PO4, 120 mg/L MgSO4·7H2O, 2.86 mg/L H3BO3, 2.3 mg/L MnSO4·4H2O, 2.8mg/L ZnSO4·7H2O, 13 mg/L Na2MoO4·2H2O, 2.2 mg/L CaSO4·5H2O) and sterilized in a polypropylene planting bag. Germinated seeds were transferred into growth medium (one seeding/bag). Seven-day-old soybean seedlings were divided into four groups: first group served as controls (CK), second group was treated with 100 μM NaHS (H), third group was inoculated with rhizobia (Sinorhizobium fredii Q8 strain) (Q), fourth group inoculated with S. fredii and treated with NaHS (QH). All seedlings in the Q and QH groups were inoculated with 10 mL of a rhizobial suspension (OD600 = 0.5) when the first main leaves of plants were fully expanded. NaHS was used as the H2S donor (Christou et al., 2013). Seedlings in the H and QH groups were watered with 10 mL of NaHS solution (100 μM) every 3 days until harvest, and seedlings from the other two groups were watered with double distilled H2O instead. 50 ml of sterile nitrogen-free nutrient solution was added into each bag every 7 days to maintain the steady humidity and ionic concentration. Twenty seedlings were harvested every 7 days since inoculation from each group, and half of the samples were dried to a constant weight for dry matter determination, while the other half was immediately frozen in liquid nitrogen and stored at −80°C.
Root length, shoot length, root weight, and shoot weight measurements
The longest distance of root/shoot tip to the junction of root and shoot were set as root length and shoot length. Twenty soybean seedlings of each treatment group were used as replicates for these measurements.
Nitrogenase activity determination
Nitrogenase (Nase) activity was quantified using the acetylene reduction method by Fishbeck et al. (1973) with slight modifications. Fresh soybean root nodules were transferred into a 10 mL rubber-capped airtight glass bottle filled with a mixture of acetylene and air (v:v = 1:100). Bottles were incubated at 28°C for 3 h, and the content of ethylene was determined using a gas chromatography system (Agilent Technologies, La Jolla, CA, USA).
Infection event assay
The S. fredii Q8 strain harboring the enhanced green fluorescence protein encoded on the pMP2444 plasmid was employed. The plasmid was incorporated into the Q8 strain by tri-parent hybridization through the assistant plasmid pRK2013 (Nishikawa et al., 2008). Soybean roots were inoculated with a rhizobial suspension as described above, and typical infection events were determined at 5 and 7 DPI using a BX53 fluorescence microscope (Olympus, Tokyo, Japan).
Development of a fluorescence probe for H2S application and fluorescent intensity quantification
H2S fluorescent probe SF7-AM was purchased from Sigma-Aldrich (CAS: 1416872–50-8; Dallas, TX, USA). As described by Lin et al. (2013), plant tissues were incubated in 5 mM SF7-AM for 1 h, washed with 20 mM HEPES, and visualized and photographed using a BX53 fluorescence microscope (Olympus, Tokyo, Japan). The fluorescence intensity was quantified by ImageJ software (National Institutes of Health, Bethesda, MD, USA).
Electron microscopy observation of nodule micromorphology
Root nodules observed using a transmission electron microscope (FEI, Czech, USA). Plant tissues treated with/without 100 μM NaHS were gently washed, and clean root nodules were cut into tiny slices, prefixed in 4% glutaraldehyde, washed with 0.1 M pH 6.8 phosphate buffer, and post-fixed in 1.0% osmium tetroxide. After at least 3 h of fixation, nodules were dehydrated in an ascending ethanol series (Yuan et al. 2017), and embedded in LR white resin. Finally, thin sections were excised from the embedded samples using an ultramicrotome equipped with a glass knife, and ultrathin sections were mounted on copper grids for transmission electron microscopy examination.
Chlorophyll content determination
Measurement of the chlorophyll content in soybean seedlings was carried out using a SPAD-502 Plus leaf chlorophyll meter (Konica Minolta, Kumamoto, Japan). A total of 20 leaves (third fully developed leaf) from 10 soybean seedlings per treatment were measured at 10:00 am every 7 days until harvest.
Determination of photosynthesis and chlorophyll fluorescence parameters
Photosynthetic rate (Pn), stomatal conductance (Gs), carbon dioxide concentration (Ci), transpiration rate (Tr) and vapor pressure divicit (Vpdl) were measured using a portable photosynthesis system (Li-6400, LiCor, Lincoln, NE, USA) on the second fully expanded leaf of soybean seedling. Ten different leaves from ten different soybean seedlings were set as replicates, and the measurement were conducted three times. Air temperature, light intensity, CO2 concentration, and air relative humidity were maintained at 25°C, 800 μmol m−2 s−1 PAR, 380 μL l−1, and 90%, respectively. Determination was conducted from 9:00 am to 11:00 am to avoid high temperature and air vapor pressure deficits. Light was supplemented using an LED light system. Vapor pressure deficit during measurement was ∼1 kPa.
Chlorophyll fluorescence measurement was conducted on 10 leaves (third fully developed leaf) from 10 soybean seedlings using a Plant Efficiency Analyzer (Hansatech Instruments Ltd., Norfolk, England). Before measurement, leaves were pretreated in the dark for 30 min. Fo, Fm, Fv (= Fm - Fo), and Fv/Fm parameters were recorded for 15 s at a photon flux density of 4000 μmol m−2 s−1. Additionally, we measured the steady-state fluorescence level (Fs′) under continuous illumination, the maximal fluorescence level (Fm′) induced by a saturating light pulse at the steady-state, and the minimum fluorescence level (Fo′) after exposure to far-red light for 3 s. Then, Fv′ was calculated using the formula Fv′ = Fm′ - Fo′. PSII was calculated using the formula PSII = 1 - (Fs′ / Fm′). The ETR was calculated using the formula ETR = PAR × PSII × 0.85 × 0.5. NPQ was calculated using the formula NPQ = (Fm / Fm′) - 1. qP was calculated using the formula qP = (Fm′ - Fs) / (Fm′ - Fo′) (Krause & Weis, 2003).
Sodium dodecyl sulfate-polyacrylamide gel electrophoresis and western blotting assays
Total protein of soybean samples was extracted following the protocol of Chen et al. (2011). After total protein isolation, protein concentrations were quantified using the Bradford (1976).
For western blotting analysis, proteins (200 μg for each sample) were separated by SDS-polyacrylamide gel electrophoresis (PAGE) using 12% acrylamide gels, and transferred to a polyvinylidene difluoride membrane. The membrane was blocked overnight with 5% skim milk powder. Protein blots were probed with primary antibodies for nifH (1:2000, Agrisera, Sweeden, AS01 021A) or CHS (1:1000, Agrisera, AS12 2615) at a dilution of 1:5000 or 1:3000, respectively, at 4°C overnight. Blots were washed three times in TBST solution (50 mM TRIS-HCl pH 8.0, 150 mM NaCl, 0.05% tween-20), followed by incubation with secondary antibody (anti-rabbit IgG horse radish peroxidase-conjugated, Sungene, China, 1:5000 dilution) overnight at 4°C. Actin (1:5000; Agrisera, AS13 2640) was used as an internal control. Blots were finally washed with PBST three times, and imaged using a Molecular Imager Gel Doc XR System (BioRad, Hercules, CA, USA). The optical density value was determined using Image J software and used to estimate the protein abundance.
Total RNA isolation, reverse transcription, and gene expression analysis
Total RNA isolation was performed using the TaKaRa MiniBEST Plant RNA Extraction Kit (Takara, Dalian, China) according to the manufacturer’s instructions. RNA integrity was examined by 1% agarose gel electrophoresis. RNA concentration was determined using an Epoch Microplate Spectrophotometer (BioTek, Winooski, VT, USA). Reverse transcription was conducted using TaKaRa PrimerScript TM RT master Mix (Takara) as suggested by the manufacturer. qRT-PCR was carried out with a Quantstudio 6 Flex real-time PCR system (Thermo Fisher, Carlsbad, CA, USA) and SYBR Premix Ex Taq II (Takara). The qPCR program are described in Table S2. Primer sequences are listed in Table. S1.
Statistical analysis
Statistical significance was tested by analysis of variance using SPSS 19.0 (SPSS Inc., Chicago, IL, USA). All the significances in time course experiments were tested using the repeated measured ANOVA of general linear model, for these parametric tests, differences were considered statistically significant at P < 0.05.
Results
Exogenous addition of H2S donor promotes soybean plants growth
To explore the regulatory effects of H2S on soybean plant growth and symbiosis with S. fredii, 10 mL of 100 μM NaHS solution was used to treat each soybean roots, and the growth of roots and shoots was measured after inoculation. In both inoculated and non-inoculated groups, NaHS treatment promoted root elongation (Fig. 1A). In the inoculated plants, average root length was elevated by H2S treatment at most of the checkpoints, and this increase in root length was turned out to be statistically significant (F = 4.876, P = 0.046) by repeated measured (RM) ANOVA of general linear model (GLM). In the non-inoculated plants, NaHS treatment also slightly extended the average root length, but the extension of root length by NaHS treatment was not significant (RM GLM, F = 3.183, P = 0.087). Similar results were observed in soybean shoots. Shoot length curve indicated that NaHS treatment did not have a significant effect on shoot elongation in non-inoculated soybean plants (RM GLM, F = 2.061, P = 0.193). However, in the inoculated soybean plants, the average shoot length was significantly increased by NaHS treatment (F = 4.294, P = 0.048) (Fig. 1B). The biomass of dry matters in inoculated soybean roots was significantly higher compared with non-treated plants (RM GLM, F = 12.323, P = 0.013). However, there was no significant difference observed among the other three treatments (Fig. 1C). NaHS treatment only provided a very slight and not significant promotion in shoot dry weight compared with respective controls in both inoculated and non-inoculated plants (RM GLM, F = 0.973, P = 0.392; F = 2.986, P = 0.089) (Fig. 1D). Taken together, these results demonstrated that NaHS treatment promoted the growth of soybean seedlings, especially the growth of soybean roots under symbiotic conditions.
H2S’s effect on the growth of soybean seedlings. Time course of root and shoot length (A, B) and dry weight (C, D) for soybean plants. (E) Soybean plants following different treatments at 14 days post-inoculation (DPI). Soybean plants were harvested every 7 days since inoculation. Values are means ± SE (n = 20). CK, Controls. H, 100 μM NaHS. Q, Soybean seedlings inoculated with Sinorhizobium fredii Q8 strain. QH, Soybean seedlings inoculated with S. fredii Q8 strain and treated with 100 μM NaHS.
Exogenous addition of the H2S donor promotes rhizobial infection, root nodulation, and nitrogenase activity
We counted the number of nodules on each harvested soybean root at 7, 14, 21, 28, 35 and 42 DPI to determine the effects of NaHS on nodulation in soybean plant. The result showed that H2S promoted soybean nodulation (RM GLM, F = 9.74, P = 0.019, Fig. 2A). Meanwhile, the addition of NaHS promoted not only soybean nodulation, but also the N fixation ability of these nodules. Nase activity assay which was measured by the acetylene reduction (AR) experiments showed that NaHS treatment significantly increased Nase activity in root nodules (RM GLM, F = 22.874, P = 0.007) (Fig. 2B). The AR ability showed significant increase compared with the control, these results suggested that H2S stimulated soybean nodulation and enhanced the N fixing potential of the soybean-rhizobia symbiotic system.
H2S’s effect on soybean nodulation and nitogenase (Nase) activities. Root nodule amount (A) and nitrogenase activity assay (B). Infection events assay at 5 DPI (C) and 7 DPI (D). (E) indicates red functional nodules obtained from soybean roots at 14 DPI. For nodule amount, values are means±SE (n=20). For nitrogenase activity, values=means ± SE (n=5). * p < 0.05. Q: Soybean seedlings inoculated with Sinorhizobium fredii Q8 strain. QH: Soybean seedlings inoculated with S. fredii Q8 strain and treated with 100 μM NaHS.
Additionally, another phenotypic analysis of infection events was conducted to further delineate the effect of NaHS treatment on soybean nodulation. Root hair curling, infection threads, and nodule primordia formed during the nodulation process were observed and counted (Fig. 2C and Fig. S4). At 5 DPI, more root hair curling and developing infection threads were found in NaHS-treated soybean roots (Fig. 2C). However, no significant difference in number of cortex infection threads and nodule primordia were found between NaHS-treated and untreated soybean roots. At 7 DPI, cortex infection threads in NaHS-treated soybean roots were more abundant than those in untreated controls (Fig. 2D). In addition to enhanced nodulation in NaHS-treated soybean plants, the average size of red mature root nodules on soybean roots harvested at 14 DPI was noticeably larger than on untreated control roots (Fig. 2E). These results suggested that H2S may act as a positive regulator of soybean nodulation.
Exogenous addition of an H2S donor increases endogenous H2S concentration in soybean roots and nodules
To confirm that the observed changes were caused by the H2S released from NaHS, we used an H2S-specific fluorescence probe to measure the amount of endogenous H2S in soybean plant tissues including lateral root, main root, and nodule. Endogenous H2S was measured in different soybean tissues after loading with the sulfidefluor-7-acetoxymethyl ester (SF7-AM) probe (Fig. 3 and Fig. S3). Before NaHS treatment, the observed low fluorescence intensity indicated a low concentration of endogenous H2S in these tissues (Fig. 3G-I). After treatment with 100 μM NaHS, higher fluorescence intensity was observed, indicating that NaHS significantly increased the endogenous H2S concentration in these tissues (Fig. 3J-L). Due to the drastic increment of fluorescent intensity by the NaHS treatment, we may rule out the possibility of this strong fluorescent was caused by autofluorescent. The effect of NaHS treatment on endogenous H2S concentration in plant tissues was also verified by quantification of the fluorescence intensity in these tissues (Fig. S3). Together, these results indicated that NaHS treatment significantly increased the endogenous H2S concentration in soybean tissues.
Fluorescence probe assay of endogenous H2S in different soybean plant tissues. (A–C), bright field images of untreated plant tissues. (D–F), fluorescence field images of untreated plant tissues. (G–I), Fluorescence field images of tissues loaded with H2S-specific fluorescence probe SF7-AM. (J–L), Tissues loaded with SF7-AM and treated with 100 μM NaHS. Bar = 200 μm.
H2S influenced bacteroids colonization
We used light microscope to determine whether H2S could lead to structural changes in nodules. However, the paraffin sections of nodules obtained at different time did not exhibit any significantly difference between NaHS treated nodules and control nodules (Fig. S5).
Transmission electron microscopy was then conducted to observe the microscopic structure of infected cell bacteroids in nodules. Bacteroids in nodules harvested at 7, 21, and 28 DPI exhibited typical morphological characteristics (data not shown), and no obvious differences were found between NaHS-treated nodules and controls. However, at 14 DPI, intercellular colonization of bacteroids was observed in NaHS-treated nodules (Fig. 4B, indicated by dark triangles). Typical bacteroids were present inside nodule cells and surrounded by a plant-derived peribacteroid membrane (indicated by a dark arrows in Fig. 4A, B), but separated bacteroids in the intercellular space lacked the typical peribacteroid membrane structure compared with the control nodules harvested at 14 DPI (Fig. 4A). These results implied that H2S may be involved in the regulation of rhizobial differentiation in soybean nodules.
Transmission electron microscopy analysis of nodule ultrastructure. Nodule of control soybean seedling (A). Nodule of soybean seedling treated with100 μM NaHS (B). Nodules were obtained at 14 days post-inoculation. Black arrows indicate bacteroids in infected cells, and black triangles indicate intercellular bacteroids. Bars = 5 μm.
Chlorophyll content, photosynthesis intensity, and photosystem II activity are elevated by H2S
NaHS treatment increased the chlorophyll content in both inoculated and non-inoculated plants from 7 to 42 DPI. In the inoculated soybean plants, the chlorophyll content in soybean leaves was significantly increased by NaHS treatment (RM GLM, F = 32.338, P = 0.004). While in the non-inoculated plants, NaHS did not make any significant difference (RM GLM, F = 2.004, P = 0.182) (Fig. 5A). Net photosynthetic rate (Pn) curve indicated that NaHS treatment enhanced the photosynthesis in soybean leaves in the inoculated plants, (RM GLM, F = 20.841, P = 0.023). Again, NaHS treatment did not influence Pn in non-inoculated plants (RM GLM, F = 2.332, P = 0.079) (Fig. 5B). Stomatal conductance (Gs) of both inoculated and non-inoculated plants was not affected by NaHS (RM GLM, F = 2.081, P = 0.164; F = 2.827, P = 0.095) (Fig. 5C). Furthermore, no significant difference of the intercellular carbon dioxide concentration (Ci) was observed in neither inoculated nor non-inoculated soybean plants (RM GLM, F = 2.339, P = 0.138; F = 1.887, P = 0.295) (Fig. 5D). Transpiration rate (Tr) and vapor pressure deficit of leaf (Vpdl) were not markedly regulated by NaHS treatment (Fig. 5E-F).
H2S’s effect on photosynthetic parameters. Chlorophyll content (A), net photosynthetic rate (Pn, B), stomatal conductance (Gs, C), carbon dioxide concentration (Ci, D), transpiration rate (Tr, E) and Vapor pressure divicit (Vpdl, F). Values are means ± SE (n = 10). CK, Controls. H, 100 μM NaHS. Q, Soybean seedlings inoculated with Sinorhizobium fredii Q8 strain. QH, Soybean seedlings inoculated with S. fredii Q8 strain and treated with 100 μM NaHS.
In terms of chlorophyll fluorescence parameters, the quantum yield of PSII photochemistry (PSII), the ratio of variable fluorescence to maximum fluorescence (Fv/Fm), and photochemical efficiency of PSII in the light (Fv′/Fm′) followed a similar trend after treatment with 100 μM NaHS (Fig. 6A, C, D). In the non-inoculated group, PSII in NaHS-treated plants was higher than controls at all checkpoints (RM GLM, F = 8.828, P = 0.036). Similarly, in the inoculated group, PSII in NaHS-treated plants was higher than controls (RM GLM, F = 5.352, P = 0.047) (Fig. 6A). Electronic transport ratio in inoculated plants was increased in the early stage of the NaHS treatment, while in the late stage, ETR was lower in NaHS-treated plants than control plants, however, no statistically significant difference was made by NaHS treatment (RM GLM, F = 0.963, P = 0.759). In non-inoculated plants, the effect of NaHS on ETR was not obvious (RM GLM, F = 1.023, P = 0.702) (Fig. 6B). Fv/Fm in inoculated plants was higher than in non-inoculated plants. However, in both inoculated and non-inoculated groups, there was not significantly difference between NaHS-treated and control plants during the entire testing period (RM GLM, F = 3.392, P = 0.055; F = 1.977, P = 0.183) (Fig. 6C). In non-inoculated plants, NaHS treatment did not affect Fv′/Fm′ (RM GLM, F = 1.339, P = 0.217). However, in inoculated plants, Fv′/Fm′ in NaHS-treated plants was higher than controls from (RM GLM, F = 9.521, P = 0.029) (Fig. 6D). NaHS treatment did not have a significant regulatory effect on non-photochemical quenching (NPQ) and photochemical quenching (qP) parameters in soybean plants (Fig. 6E, F).
H2S’s effect on chlorophyll fluorescent parameters. Quantum yield of PSII photochemistry (PSII, A), electronic transport ratio (ETR, B), the ratio of variable fluorescence to maximum fluorescence (Fv/Fm, C), photochemical efficiency of PSⅡ in the light (Fv′/Fm′) (D), NPQ (E) and photochemical quenching (qP, F). Values are means ± SE (n = 10). CK, Controls. H, 100 μM NaHS. Q, Soybean seedlings inoculated with Sinorhizobium fredii Q8 strain. QH, Soybean seedlings inoculated with Sinorhizobium fredii Q8 strain and treated with 100 μM NaHS.
H2S affects symbiosis and nirtogen fixation-related protein expression
Western blotting analysis of chalcone synthase (CHS) and the Nase iron-containing protein (nifH) were conducted to investigate the regulatory effects of H2S on the expression of key proteins involved in symbiotic establishment and nitrogen fixation. The result of western blotting indicated that H2S did not trigger any significant changes in the protein expression abundance of CHS in NaHS treated soybean root nodules compared with the non-treated controls (Fig. 7A, B). However, NaHS treatment significantly increased the protein expression level of nifH in root nodules. At 14, 21, 28, 35 DPI, the abundances of nifH protein were significantly higher than that in the control nodules (Fig. 7A, C).
Western blotting analysis of the expression of chalcone synthase (CHS) and the nitrogenase iron-containing protein (nifH) in soybean nodules at 14, 21, 28, and 35 days post-inoculation (DPI; A). Expression levels of CHS and nifH are relative to actin (B and C). Values are means ± SE (n = 3). * p < 0.05. Q, Soybean seedlings inoculated with Sinorhizobium fredii Q8 strain. QH, Soybean seedlings inoculated with Sinorhizobium fredii Q8 strain and treated with 100 μM NaHS.
RT-qPCR analysis of the expression of symbiosis-related gene
To further elucidate the mechanism that H2S promoted nodulation in soybean, we examined the expression profile of several nodulation marker genes in soybean roots including GmENOD40, GmERN, GmNSP2b, GmNIN1a, GmNIN2a, and GmNIN2b. We selected 12 h, 1 d, 3 d, 5 d and 7 d post inoculation of S. fredii as checkpoints. The qRT-PCR results demonstrated that H2S stimulated the expression levels of these genes in soybean roots. For instance, repeated measured ANOVA of general linear model suggested that in the inoculated soybean roots, NaHS treatment significantly elevated the expression levels of GmENOD40 (F= 10.253, P = 0.027) (Fig. 8A) and GmNIN1a (F = 9.354, P = 0.039) (Fig. 8D) in the inoculated roots during the entire treatment period. As for GmERN and GmNSP2b, NaHS treatment led to significant up-regulation in their expression levels only from 12 h to 3 d post inoculation (F = 10.265, P = 0.007; F = 21.236, P = 0.01) (Fig. 8B, C). On the other hand, GmNIN2a and GmNIN2b expression in inoculated roots were stimulated by NaHS treatment only from 3 DPI to 7 DPI (F = 15.581, P = 0.017; F = 18.242, P = 0.013) (Fig. 8E, F). NaHS treatment did not give rise to any significant difference in the non-inoculated soybean roots.
Gene expression level of symbiotic related genes. Relative expression levels of GmENOD40 gene (A), GmERN gene (B), GmNSP2b gene (C), GmNIN1a gene (D), GmNIN2a gene (E), GmNIN2b gene (F), NodA gene (G), NodC gene (H) and NodD (I) gene are displayed in multiple line charts with symbols. CK, controls. H, soybean plants treated with 100 μM NaHS. Q, Soybean plants inoculated with the Sinorhizobium fredii Q8 strain. QH, Soybean plants inoculated with the Sinorhizobium fredii Q8 strain and treated with 100 μM NaHS. The expression of GmENOD40, GmERN, GmNSP2b and GmNIN genes were relative to the expression level of respective gene in CK roots at 0.5 DPI. The expression of nodA, nodC and nodD were relative to the expression level of respective gene in Q nodules at 5 DPI. Values are means ± SE (n = 9).
The expression of nodA, nodC and nodD genes of S. fredii was examined to verify whether NaHS treatment could also induce the symbiotic reaction in rhizobia. In this quantitive assay, root nodules were used and 5, 7, 14, 21, 28 and 35 DPI was selected as checkpoints. qRT-PCR results suggested that the expression of nodC and nodD were significantly induced by NaHS treatment (RM GLM, F = 5.617, P = 0.036; F = 11.338, P = 0.021) (Fig. 8H, I). Though the relative expression levels of nodA was also up-regulated in the NaHS-treated soybean nodules, but the difference failed to exhibit statistical significances within the entire treatment period (RM GLM, F = 3.336, P = 0.069) (Fig. 8G).
RT-qPCR analysis of the relative expression of key enzymes related to nitrogen metabolism
Expression of N-metabolism related genes was investigated to determine the possible influence of H2S on the molecular mechanisms of symbiotic nitrogen fixation and nitrogen metabolism in soybean plants. Glutamate synthase (GmGOGAT), asparagine synthase (GmAS), nitrite reductase (GmNiR), ammonia transporter SAT1 (GmSAT1), leghemoglobin (GmLb) in soybean plant, and nifH in S. fredii were selected for qRT-PCR analysis.
The transcript abundances of GmGOGAT is higher during the entire NaHS treatment period than that in control plant (RM GLM, F = 7.136, P = 0.047) (Fig. 9A). However, the promotion of GmNiR expression was only significantly up-regulated by NaHS treatment from 5 to 28 DPI (RM GLM, F = 10.391, P = 0.029) (Fig. 9C). Moreover, NaHS treatment also up-regulated the expression levels of GmSAT1 and nifH (RM GLM, F = 4.027, P = 0.041; F = 3.913, P = 0.046) (Fig. 9D, F). Though the expression levels of GmAS and GmLb did not show statistically significant variation during the entire treatment, they were slightly up-regulated by NaHS treatment at most of the checkpoints in the inoculated roots (RM GLM, F = 3.301, P = 0.192, F = 2.782, P = 0.210) (Fig. 9B, E).
Gene expression level of nitrogen metabolism related genes. Relative expression levels of GmGOGAT (A), GmAS (B), GmNiR(C), and GmSAT1(D), GmLb (E) and nifH (F) are displayed in multiple-line charts with symbols. CK, controls. H, soybean plants treated with 100 μM NaHS. Q, Soybean plants inoculated with the Sinorhizobium fredii Q8 strain. QH, Soybean plants inoculated with the Sinorhizobium fredii Q8 strain and treated with 100 μM NaHS. The expression of GmGOGAT, GmAS, GmNiR and GmSAT1 genes were relative to the expression level of respective gene in CK roots at 0.5 DPI. The expression of GmLb and nifH were relative to the expression level of respective gene in Q nodules at 7 DPI. Values are means ± SE (n = 9).
Discussion
H2S promotes soybean plant growth in the soybean-rhizobia symbiotic system
NaHS has been used as an exogenous H2S donor to study the physiological effects of H2S in many studies (Tamizhselvi et al., 2007; Wang et al., 2010; Li et al., 2012; Shi et al., 2013). To find the optimal concentration of NaHS for the growth of soybean, different concentrations (0, 10, 25, 50, 100, 250 and 500 μM) were used to treat soybean plants and S. fredii in liquid culture medium in our preliminary experiments. For S. fredii, 100 μM NaHS was shown to be the maximal concentration that did not significantly impact rhizobial growth (Fig. S1). For soybean plants, 100 μM NaHS was the optimal concentration for root length, shoot length, and biomass yield (Fig. S2). These preliminary results were in agreement with those of previous studies by Chen et al. (2011), Christou et al. (2014), and Tamizhselvi et al. (2007) using other plant materials. The ability of releasing H2S and increase the endogenous H2S concentration in soybean tissues (roots and shoots) by 100 μM NaHS was confirmed using the specific SF7-AM probe (Fig. 3 and Fig. S3).
Numerous experiments have shown that H2S can cause various biological effects in plants. In addition to alleviation of abiotic stresses such as heavy metals, heat, drought, and mineral salts (Zhang et al., 2008; Li et al., 2012; Shi et al., 2013; Chen et al., 2016), H2S was also found to be involved in regulating plant growth via different mechanisms (Chen et al., 2011; Zhang et al., 2011; Dooley et al., 2013). In the present study, we found that 100 μM NaHS promoted the growth of soybean plants under symbiotic conditions with the S. fredii(Fig. 1). In the inoculated soybean plants, NaHS treatment increased the root length and dry weight of roots (Fig. 1A, C). This indicated that H2S promoted the formation and development of roots, which is consistent with the findings of Zhang et al. (2009) in sweet potato. However, the length and biomass of shoots was not significantly affected by NaHS treatment. (Fig. 1B, D). As the total sulfur content in NaHS treatment is much lower than that in nitrogen-free nutrient solution (1:43), we may rule out the possibility that such changes in soybean growth were caused by extra addition of sulfur. Besides, Kalloniati et al. (2015) suggested that N-fixing nodules may act as source of reduced S and enhance the S assimilation of the legume plants. Together, these results indicated a potential role for H2S in regulating the symbiosis between G. max and S. fredii, which could promote symbiotic nitrogen fixation and consequently plant growth of soybean.
H2S promtoes the formation of root nodules and nase activity
Nitrogen-fixing nodules formed by the symbiosis of rhizobia and legume plants are essential for fixation of nitrogen in the environment (Lee et al., 2014). The nodulation process is regulated by two critical systemic signaling events. The first is the recognition of the two symbiotic partners and the initiation of nodulation, which occurs in the rhizosphere. The second occurs within the plant to regulate the number of nodules as a means of balancing the resource cost and nitrogen benefit associated with nodulation (Hayashi et al., 2013). Many small molecules such as NO, H2O2, and phytohormones have been reported to be involved in the regulation of nodulation between legumes and rhizobia (Hirsch et al., 1997; Hérouart et al., 2002; Puppo et al., 2013). Here, we demonstrated that exogenous H2S increased the average number of nodules and the Nase activity in soybean roots (Fig. 2A, B).
In the M. truncatula-S. meliloti system, Del Giudice et al. (2011) confirmed the crucial position of NO in successful infection. Studies in Arabidopsis have shown that auxin accumulation is a prerequisite for organ formation in plants (Ferguson & Mathesius, 2014). External treatment of roots with auxins and auxin action inhibitors suppressed nodule formation, indicating that auxins are required for nodulation within a certain concentration range in Medicago truncatula (van Noorden et al., 2006). Infection event assays showed that during the early stages of the establishment of symbiosis, a larger number of infection events occurred in NaHS-treated soybean roots (Fig. 2C, D), suggesting that H2S may regulate the bacterial infection in the nodulation process, and may enhance the colonization of S. fredii into soybean nodules. Nase is the essential enzyme for symbiotic nitrogen fixation that catalyzes the conversion of dinitrogen into ammonia (Fishbeck et al., 1973). In the present study, Nase activity in NaHS-treated nodules was enhanced (Fig. 2B). The Nase complex consists of two metalloproteins that are highly conserved in sequence and structure throughout nitrogen-fixing bacteria (Halbleib & Ludden, 2000). One protein component contains the active site for substrate reduction with a molybdenum-iron (MoFe) cofactor, while the other iron (Fe)-containing protein acts as election donor to the MoFe component (Roth et al., 2010). The Fe protein is a 64 kDa α2 dimer of the nifH gene product (Halbleib & Ludden, 2000). In this research, we detected the nifH protein as an indicator for Nase content using western blotting analysis. The results showed that the abundance of the nifH protein was significantly increased by NaHS treatment (Fig. 7A, C). And this result is in coincidence with the result by qRT-PCR analysis of nifH gene expression (Fig. 9F). NaHS treatment increased the transcription abundance of nifH during the treatment (Fig. 9F). Together, the results of western blot analysis and qRT-PCR indicated that the NaHS treatment promoted the Nase activity through up-regulating the expression of nifH gene and increasing Fe protein content in soybean root nodules.
Baudouin et al. (2006) demonstrated that NO is synthesized in M. truncatula nodules, and is required for nodule functioning, and Leach et al. (2010) used NO synthase-specific inhibitors to show that NO is crucial for the development of functional nodules in soybean. In our current study, transmission electron microscopy was conducted to observe the microscopic structure of infected cells, symbionts, and bacteroids. Interestingly, bacteroids without a surrounding peribacteroid membrane were present in the intercellular space at 14 DPI in NaHS-treated nodules (Fig. 4B). It was worth noting that no typical symbiont structure was formed by these intercellular bacteroids. Thus, H2S may act as a signaling molecule in regulating the localization and differentiation of bacteroids in root nodules. Collectively, our results suggested H2S was closely related to rhizobial infection, bacteroid differentiation, nitrogen fixation, and nodule development in the soybean-rhizobia symbiotic system.
H2S promotes photosynthetic and photochemical activity in soybean plants
Herein, we demonstrated the regulatory role of H2S in symbiosis, nitrogen fixation, and metabolism in the soybean-rhizobia symbiotic system. In plants, adequate nitrogen content can positively affect many physiological processes, such as flowering, carbon assimilation in tissues, and ion uptake (Fernandes & Rossiello, 1995; Xu et al., 2001; Liu et al., 2008). In addition, nitrogen content is closely related to chlorophyll content and photosynthesis in plant leaves (Gulmon & Chu, 1981; Lapointe, 1987), because nitrogen is a composition of chlorophyll and photosynthesis-related proteins. Thereby, nitrogen content in soybean plants may influence the formation of chloroplasts and accumulation of chlorophyll in them. In this work, both chlorophyll content and photosynthetic rate were elevated in leaves of NaHS-treated plants (Fig. 5). Additionally, soybean plants were cultured in perlite-vermiculite substrate and watered with nitrogen-free nutrient solution. It caused nitrogen starvation during plant growth. As H2S may promote soybean nodulation and nitrogen fixation ability, it may increase the nitrogen supplement in the soybean plants, which eventually alleviated nitrogen starvation and increased chlorophyll content and photosynthetic rate in the NaHS treated soybean plants. Although, H2S significantly increased the chlorophyll content in the soybean leaves, it did not significantly affect the NH4+ and NO3− concentration in soybean roots and shoots (Fig. S6). This result is understandable, that under nitrogen deficiency conditions, limited nitrogen in plant tissues will be rapidly transformed into organic compounds.
H2S also acted as a modulator of PSII activity in soybean. Specifically, PSII, Fv/Fm, and Fv′/Fm′ parameters in inoculated plants were increased (Fig. 6A, C, and D), indicating that the photochemical efficiency of PSII was increased. These are consistent with the increase in chlorophyll content caused by 100 μM NaHS treatment. Together with increased chlorophyll content and PSII activity, this enhanced photosynthesis led to higher carbon assimilation, and ultimately to increased biomass of soybean.
H2S regulates the expression of genes and proteins related to symbiosis and nitrogen metabolism
After analysis at the phenotypic level, we sought to elucidate the effects of H2S on the expression of genes and proteins related to symbiosis and nitrogen fixation in the soybean-rhizobia system. Firstly, we focused our attention on CHS, an enzyme catalyzing the synthesis of chalcone, which is reported to be a key precursor of a series of flavonoids (Schijlen et al., 2007; Dao et al., 2011). Li et al. (1993) demonstrated that CHS-deficient Arabidopsis displayed lower production of flavonoids. In the present study, the results of western blotting analysis showed that the abundances of CHS in root nodules were not affected by H2S (Fig. 7A, B).
Then, we investigated the expression of genes related to symbiosis and nitrogen metabolism in root nodules. GmENOD40 was reported to be the downstream components of the perception of NFs (Ferguson et al., 2010), which is expressed in pericycle cells of root vascular bundles, dividing cortical cells, the nodule primordium, and developing nodules (Ferguson & Mathesius, 2014). Charon et al. (1999) reported that alteration in the expression of ENOD40 could influence the nodulation, suggesting that it plays a vital role in in nodule organogenesis. In the present study, expression of GmENOD40 gene in soybean was up-regulated by NaHS treatment (Fig. 8A). NIN is essential for nodule organogenesis and is also required for the initiation of bacterial infection in the roots (Madsen & Al, 2009; Vernié et al., 2015). In this case, the expression levels of three NIN genes in soybean were up-regulated by NaHS treatment (Fig. 8D, E, F). Besides, the other two nodulation marker genes involved in the NFs nodulation pathway, GmERN and GmNSP2b were also activated in the NaHS treated soybean roots (Fig. 8B, C). Together, the present results suggested that H2S stimulated the expression of GmENOD40, GmERN, GmNSP2b, and GmNIN genes. As these genes play a crucial role in the NFs nodulation signaling pathway and are closely related to the organogenesis and development of root nodules. These results may elucidate the underlying mechanisms of enhanced nodulation and nodule structural changes, that NaHS promoted soybean nodulation and nodule development through regulating the expression abundances of symbiotic related genes.
On the bacterial side, Nod genes in rhizobia are crucial for the early stages of recognition by legume hosts because they encode host-specific lipochito-oligosaccharidic Nod factors (NF) that can activate downstream symbiotic reactions by binding to plant kinase-like receptors (Giraud et al., 2007). Among the nod genes, nodD is a key player, because after sensing flavonoid signals secreted by legume roots into the soil, nodD initiates the expression of other nod genes (Machado & Krishnan, 2003). The results of qRT-PCR demonstrated that transcript abundances of nodC and nodD genes were increased in NaHS-treated nodules, suggesting H2S does not only promote symbiosis by affecting the legume host, but also triggers symbiotic responses in the rhizobia.
Uptake of nitrate by root cells followed by reduction and assimilation in plant tissues is the main route by which mineral nitrogen is converted into organic nitrogen by living organisms. Like photosynthesis, these are life-dependent processes (Imsande & Touraine, 1994). In our study, the relative expression levels of six genes related to nitrogen metabolism, including soybean genes GmGOGAT, GmAS, GmNiR, GmSAT1, GmLb, and rhizobial gene nifH, were quantified by qRT-PCR. These genes encode crucial players in amino acid metabolism and nitrogen assimilation. Expression of GmGOGAT, GmAS, GmNiR, and GmSAT1 was strongly induced by H2S compared to untreated controls. Glutamic acid and aspartic acid are two essential amino acids that provide carbon skeletons for the synthesis of many amino acids by transamination. Indeed, δ-aminolevulinic acid, a precursor of chlorophyll, is synthesized from the intact carbon skeleton of glutamic acid (Beale, 1990). Furthermore, asparagine is the common precursor of the essential amino acids lysine, threonine, methionine, and isoleucine in higher plants, and aspartate may also be converted to asparagine in a potentially competing reaction (Azevedo et al., 2006). The ammonium transporter encoded by GmSAT1 was reported to be located in the peribacteroid membrane, and is believed to be responsible for the transportation of ammonium fixed by bacteroids in soybean nodules (Kaiser et al., 1998). Thus, up-regulation of GmGOGAT, GmAS, and GmSAT1 indicates that H2S might enhance the transportation of fixed ammonium and its assimilation into amino acids. In addition, nitrate assimilation can occur in either the roots or leaves via the nitrate reductase-nitrite reductase pathway (Evans, 2001). The product of this assimilation event is NH4+, and assimilation of NH4+ occurs through the glutamine synthetase-glutamate synthase pathway. Assimilation occurs in the roots, near the site of uptake, to avoid toxic accumulation (Bloom, 1988). Therefore, we can conclude that Therefore, we can conclude that H2S up-regulated the expression of GmGOGAT, GmAS, GmNiR and GmSAT1 genes, through which led to higher N assimilation.
Conclusion
In this study, we demonstrated the potential role of H2S in symbiosis and nitrogen fixation in the G. max-S. fredii symbiotic system. We hypothesized a model to explain the stimulatory effects of H2S on symbiosis. As shown in Figure 10, our results suggested that H2S enhances the symbiotic relationship of G. max-S. fredii as NaHS treatment promoted nodulation and Nase activity in soybean. Besides, H2S promoted infection of rhizobia into both roots and nodules of soybean by up-regulating the expression of symbiosis related genes, such as GmENOD40, GmERN, GmNSP2b, GmNIN genes, and nodC. Additionally, the abundance of nifH protein was increased in soybean nodules following NaHS treatment. Moreover, NaHS treatment stimulated the expression of N metabolism related genes, such as GmGOGAT, GmNR, GmSAT1 and nifH. The enhanced nitrogen fixation and assimilation increased the chlorophyll content, the photosynthetic rate, and PSII activity in inoculated plants. Finally, this enhanced photosynthesis endowed soybean plants with greater biomass and more vigorous growth. Taken together, these findings suggested H2S promoted soybean growth under symbiotic conditions by enhancing the establishment of symbiosis and stimulating nitrogen fixation in the G. max-S. fredii symbiotic system. Further details of the underlying molecular mechanisms, such as the targets of H2S, and how H2S fits into regulatory signaling pathways, still need further study.
Schematic model of the mechanisms underlying the positive effects of H2S on the Glycine max-Sinorhizobium fredii symbiotic system. The model, based on the results of the present study and the wider literature, explains how exogenous H2S might influence the nodulation signaling pathway and the biological nitrogen fixation capacity in G. max.
Supplemental Data
The following materials are available on the online version of this article.
Table S1. Nucleotide sequences of primers used in the qRT-PCR assay.
Table S2. qRT-PCR programs used for relative expression assay of target genes.
Figure S1. Effect of different concentrations of NaHS treatment on cell growth of Sinorhizobium fredii.
Figure S2. Effect of different concentrations of NaHS treatment on plant growth of Glycine max.
Figure S3. Quantification of fluorescence intensity of SF7-AM in soybean tissues with and without NaHS treatment.
Figure S4. Light microscopy analysis of infection events in soybean roots.
Figure S5 Light microscopy analysis of paraffin sections of root nodules.
Figure S6 H2S’s effect on the concentration of NH4+ and NO3− in soybean roots and Shoots.
Acknowledgements
We are grateful to Yan-Tao Luo, Ming-Mei Lu and Jian-Qiang Liang for guidance on experimental methods. Shuo Jiao has provided constructive suggestions to the writing of this article. This study was financially supported by the Natural Science Foundation of China (NSFC) (31501822) and the Postdoctoral Science Foundation of China (2015M580876 and 2016T90948).
Footnotes
zouhang1108{at}126.com, zhaangnina{at}126.com, Sunny2009608{at}outlook.com, jzhang{at}hkbu.edu.hk, chenjuan{at}nwsuaf.edu.cn, weigehong{at}nwsuaf.edu.cn