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Transcriptome analysis of Pv11 cells infers the mechanism of desiccation tolerance and recovery

View ORCID ProfileTakahiro G Yamada, Yoshitaka Suetsugu, View ORCID ProfileRuslan Deviatiiarov, View ORCID ProfileOleg Gusev, Richard Cornette, View ORCID ProfileAlexander Nesmelov, View ORCID ProfileNoriko Hiroi, View ORCID ProfileTakahiro Kikawada, View ORCID ProfileAkira Funahashi
doi: https://doi.org/10.1101/368175
Takahiro G Yamada
1Department of Biosciences and Informatics, Keio University, Yokohama, Kanagawa, Japan, 223-8522
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Yoshitaka Suetsugu
2Institute of Agrobiological Sciences, NARO, Tsukuba, Ibaragi, Japan, 305-8634
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Ruslan Deviatiiarov
3Kazan Federal University, Kazan, Respublika Tatarstan, Russia, 420008
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Oleg Gusev
3Kazan Federal University, Kazan, Respublika Tatarstan, Russia, 420008
4RIKEN, Wako, Saitama, Japan, 351-0198
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Richard Cornette
2Institute of Agrobiological Sciences, NARO, Tsukuba, Ibaragi, Japan, 305-8634
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Alexander Nesmelov
3Kazan Federal University, Kazan, Respublika Tatarstan, Russia, 420008
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Noriko Hiroi
5Faculty of Pharmacy, Sanyo-onoda City University, Onoda, Yamaguchi, Japan, 756-0884
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Takahiro Kikawada
2Institute of Agrobiological Sciences, NARO, Tsukuba, Ibaragi, Japan, 305-8634
6Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan, 277-8562
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Akira Funahashi
1Department of Biosciences and Informatics, Keio University, Yokohama, Kanagawa, Japan, 223-8522
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ABSTRACT

Some organisms, such as larvae of the African midge Polypedilum vanderplanki, can enter an ametabolic state called anhydro-biosis to conquer fatal desiccation stress. In 2010, the Pv11 cell line was established, which was derived from embryos of the midge. Desiccated Pv11 cells pretreated with medium containing 600 mM trehalose resume proliferation after rehydration. The desiccation tolerance of Pv11 cells includes tolerance induction by trehalose treatment and recovery after rehydration. To address the underlying molecular mechanisms, we performed CAGE-seq of mRNA from Pv11 cells first treated with trehalose, then desiccated, and finally rehydrated, and analysed differentially expressed genes (DEGs). We detected 384 DEGs after trehalose treatment and 14 DEGs after rehydration. Hierarchical clustering of the identified DEGs indicated that rehydration returns their expression pattern to that in the control culture state. DEGs involved in various stress responses, detoxification of harmful chemicals, and regulation of oxidoreduction were upregulated by trehalose treatment. DEGs for rehydration revealed that DNA repair may be involved in recovery. This study provided initial insight into the molecular mechanisms underlying the extreme desiccation tolerance of Pv11 cells with a potential for proliferation following rehydration.

Footnotes

  • ↵* kikawada{at}affrc.go.jp and funa{at}bio.keio.ac.jp

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted July 13, 2018.
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Transcriptome analysis of Pv11 cells infers the mechanism of desiccation tolerance and recovery
Takahiro G Yamada, Yoshitaka Suetsugu, Ruslan Deviatiiarov, Oleg Gusev, Richard Cornette, Alexander Nesmelov, Noriko Hiroi, Takahiro Kikawada, Akira Funahashi
bioRxiv 368175; doi: https://doi.org/10.1101/368175
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Transcriptome analysis of Pv11 cells infers the mechanism of desiccation tolerance and recovery
Takahiro G Yamada, Yoshitaka Suetsugu, Ruslan Deviatiiarov, Oleg Gusev, Richard Cornette, Alexander Nesmelov, Noriko Hiroi, Takahiro Kikawada, Akira Funahashi
bioRxiv 368175; doi: https://doi.org/10.1101/368175

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