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Modern wolves trace their origin to a late Pleistocene expansion from Beringia

View ORCID ProfileLiisa Loog, Olaf Thalmann, Mikkel-Holger S. Sinding, Verena J. Schuenemann, Angela Perri, Mietje Germonpré, Herve Bocherens, Kelsey E. Witt, Jose A. Samaniego Castruita, Marcela S. Velasco, Inge K. C. Lundstrøm, Nathan Wales, Gontran Sonet, Laurent Frantz, Hannes Schroeder, Jane Budd, Elodie-Laure Jimenez, Sergey Fedorov, Boris Gasparyan, Andrew W. Kandel, Martina Lázničková-Galetová, Hannes Napierala, Hans-Peter Uerpmann, Pavel A. Nikolskiy, Elena Y. Pavlova, Vladimir V. Pitulko, Karl-Heinz Herzig, Ripan S. Malhi, Eske Willerslev, Anders J. Hansen, Keith Dobney, M. Thomas P. Gilbert, Johannes Krause, Greger Larson, Anders Eriksson, Andrea Manica
doi: https://doi.org/10.1101/370122
Liisa Loog
1Palaeogenomics & Bio-Archaeology Research Network Research Laboratory for Archaeology and History of Art, University of Oxford, Dyson Perrins Building, South Parks Road, Oxford OX1 3QY, UK
2Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
3Manchester Institute of Biotechnology, School of Earth and Environmental Sciences, University of Manchester, Manchester, M1 7DN, UK
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  • ORCID record for Liisa Loog
  • For correspondence: liisaloog@gmail.com greger.larson@arch.ox.ac.uk anders.eriksson@kcl.ac.uk am315@cam.ac.uk
Olaf Thalmann
4Department of Pediatric Gastroenterology and Metabolic Diseases, Poznan University of Medical Sciences, Szpitalna 27/33, 60-572 Poznan, Poland
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Mikkel-Holger S. Sinding
5Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, DK-1350 Copenhagen, Denmark
6Natural History Museum, University of Oslo, P.O. Box 1172 Blindern, NO-0318 Oslo, Norway
7The Qimmeq project, University of Greenland, Manutooq 1, PO Box 1061, 3905 Nuussuaq, Greenland
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Verena J. Schuenemann
8Institute for Archaeological Sciences, University of Tübingen, Rümelinstr. 23, 72070 Tübingen, Germany
9Senckenberg Centre for Human Evolution and Palaeoenvironment, University of Tübingen, 72070 Tübingen, Germany
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Angela Perri
10Department of Human Evolution, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, 04103 Leipzig, Germany
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Mietje Germonpré
11OD Earth and History of Life, Royal Belgian Institute of Natural Sciences, Vautierstraat 29, 1000 Brussels, Belgium
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Herve Bocherens
9Senckenberg Centre for Human Evolution and Palaeoenvironment, University of Tübingen, 72070 Tübingen, Germany
12Department of Geosciences, Palaeobiology, University of Tübingen, Tübingen, Germany
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Kelsey E. Witt
13School of Integrative Biology, University of Illinois at Urbana-Champaign, 109A Davenport Hall, 607 S. Mathews Avenue, Urbana IL 61801, USA
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Jose A. Samaniego Castruita
5Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, DK-1350 Copenhagen, Denmark
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Marcela S. Velasco
5Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, DK-1350 Copenhagen, Denmark
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Inge K. C. Lundstrøm
5Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, DK-1350 Copenhagen, Denmark
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Nathan Wales
5Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, DK-1350 Copenhagen, Denmark
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Gontran Sonet
15Faculty of Archaeology, Leiden University, Postbus 9514, 2300 RA Leiden, The Netherlands
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Laurent Frantz
2Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
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Hannes Schroeder
5Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, DK-1350 Copenhagen, Denmark
15Faculty of Archaeology, Leiden University, Postbus 9514, 2300 RA Leiden, The Netherlands
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Jane Budd
16Breeding Centre for Endangered Arabian Wildlife, PO Box 29922 Sharjah, United Arab Emirates
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Elodie-Laure Jimenez
11OD Earth and History of Life, Royal Belgian Institute of Natural Sciences, Vautierstraat 29, 1000 Brussels, Belgium
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Sergey Fedorov
17Mammoth Museum, Institute of Applied Ecology of the North of the North-Eastern Federal University, ul. Kulakovskogo 48, 677980 Yakutsk, Russia
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Boris Gasparyan
18National Academy of Sciences, Institute of Archaeology and Ethnography, Charents St. 15, Yerevan 0025, Armenia
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Andrew W. Kandel
19Heidelberg Academy of Sciences and Humanities: The Role of Culture in Early Expansions of Humans, Rümelinstr. 23, 72070 Tübingen, Germany
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Martina Lázničková-Galetová
20Departement of Anthropology, University of West Bohemia, Sedláčkova 15, 306 14 Pilzen, Czech republic
21Moravian museum, Zelný trh 6, 659 37 Brno, Czech republic
22Hrdlička Museum of Man, Faculty of Science, Charles University, Viničná 1594/7,128 00 Praha, Czech republic
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Hannes Napierala
23Institute of Palaeoanatomy, Domestication Research and History of Veterinary Medicine, Ludwig-Maximilians-University Munich, Kaulbachstraße 37 III/313, D-80539 Munich, Germany
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Hans-Peter Uerpmann
8Institute for Archaeological Sciences, University of Tübingen, Rümelinstr. 23, 72070 Tübingen, Germany
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Pavel A. Nikolskiy
24Geological Institute, Russian Academy of Sciences, 7 Pyzhevsky per., 119017 Moscow, Russia
25Institute for Material Culture History, Russian Academy of Sciences, 18 Dvortsovaya nab., St Petersburg 191186, Russia
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Elena Y. Pavlova
26Arctic and Antarctic Research Institute, 38 Bering St., St Petersburg 199397, Russia
25Institute for Material Culture History, Russian Academy of Sciences, 18 Dvortsovaya nab., St Petersburg 191186, Russia
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Vladimir V. Pitulko
25Institute for Material Culture History, Russian Academy of Sciences, 18 Dvortsovaya nab., St Petersburg 191186, Russia
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Karl-Heinz Herzig
4Department of Pediatric Gastroenterology and Metabolic Diseases, Poznan University of Medical Sciences, Szpitalna 27/33, 60-572 Poznan, Poland
27Insitute of Biomedicine and Biocenter of Oulu, Medical Research Center and University Hospital, University of Oulu, Aapistie 5, 90220 Oulu University, Finland
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Ripan S. Malhi
26Arctic and Antarctic Research Institute, 38 Bering St., St Petersburg 199397, Russia
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Eske Willerslev
2Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
5Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, DK-1350 Copenhagen, Denmark
29Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK
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Anders J. Hansen
5Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, DK-1350 Copenhagen, Denmark
7The Qimmeq project, University of Greenland, Manutooq 1, PO Box 1061, 3905 Nuussuaq, Greenland
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Keith Dobney
30Department of Archaeology, Classics and Egyptology, University of Liverpool, 12-14 Abercromby Square, Liverpool L69 7WZ, UK
31Department of Archaeology, University of Aberdeen, St Mary’s, Elphinstone Road, Aberdeen AB24 3UF, UK
32Department of Archaeology, Simon Fraser University, Burnaby, B.C. V5A 1S6, 778-782-419, Canada
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M. Thomas P. Gilbert
5Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, DK-1350 Copenhagen, Denmark
33Norwegian University of Science and Technology, University Museum, N-7491 Trondheim, Norway
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Johannes Krause
8Institute for Archaeological Sciences, University of Tübingen, Rümelinstr. 23, 72070 Tübingen, Germany
34Max Planck Institute for the Science of Human History, Khalaische Straße 10, 07745 Jena, Germany
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Greger Larson
1Palaeogenomics & Bio-Archaeology Research Network Research Laboratory for Archaeology and History of Art, University of Oxford, Dyson Perrins Building, South Parks Road, Oxford OX1 3QY, UK
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  • For correspondence: liisaloog@gmail.com greger.larson@arch.ox.ac.uk anders.eriksson@kcl.ac.uk am315@cam.ac.uk
Anders Eriksson
35Department of Medical & Molecular Genetics, King’s College London, Guys Hospital, London SE1 9RT, UK
2Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
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  • For correspondence: liisaloog@gmail.com greger.larson@arch.ox.ac.uk anders.eriksson@kcl.ac.uk am315@cam.ac.uk
Andrea Manica
2Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK
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  • For correspondence: liisaloog@gmail.com greger.larson@arch.ox.ac.uk anders.eriksson@kcl.ac.uk am315@cam.ac.uk
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ABSTRACT

Grey wolves (Canis lupus) are one of the few large terrestrial carnivores that maintained a wide geographic distribution across the Northern Hemisphere throughout the Pleistocene and Holocene. Recent genetic studies have suggested that, despite this continuous presence, major demographic changes occurred in wolf populations between the late Pleistocene and early Holocene, and that extant wolves trace their ancestry to a single late Pleistocene population. Both the geographic origin of this ancestral population and how it became widespread remain a mystery. Here we analyzed a large dataset of novel modern and ancient mitochondrial wolf genomes, spanning the last 50,000 years, using a spatially and temporally explicit modeling framework to show that contemporary wolf populations across the globe trace their ancestry to an expansion from Beringia at the end of the Last Glacial Maximum - a process most likely driven by the significant ecological changes that occurred across the Northern Hemisphere during this period. This study provides direct ancient genetic evidence that long-range migration has played an important role in the population history of a large carnivore and provides an insight into how wolves survived the wave of megafaunal extinctions at the end of the last glaciation. Moreover, because late Pleistocene grey wolves were the likely source from which all modern dogs trace their origins, the demographic history described in this study has fundamental implications for understanding the geographical origin of the dog.

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Modern wolves trace their origin to a late Pleistocene expansion from Beringia
Liisa Loog, Olaf Thalmann, Mikkel-Holger S. Sinding, Verena J. Schuenemann, Angela Perri, Mietje Germonpré, Herve Bocherens, Kelsey E. Witt, Jose A. Samaniego Castruita, Marcela S. Velasco, Inge K. C. Lundstrøm, Nathan Wales, Gontran Sonet, Laurent Frantz, Hannes Schroeder, Jane Budd, Elodie-Laure Jimenez, Sergey Fedorov, Boris Gasparyan, Andrew W. Kandel, Martina Lázničková-Galetová, Hannes Napierala, Hans-Peter Uerpmann, Pavel A. Nikolskiy, Elena Y. Pavlova, Vladimir V. Pitulko, Karl-Heinz Herzig, Ripan S. Malhi, Eske Willerslev, Anders J. Hansen, Keith Dobney, M. Thomas P. Gilbert, Johannes Krause, Greger Larson, Anders Eriksson, Andrea Manica
bioRxiv 370122; doi: https://doi.org/10.1101/370122
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Modern wolves trace their origin to a late Pleistocene expansion from Beringia
Liisa Loog, Olaf Thalmann, Mikkel-Holger S. Sinding, Verena J. Schuenemann, Angela Perri, Mietje Germonpré, Herve Bocherens, Kelsey E. Witt, Jose A. Samaniego Castruita, Marcela S. Velasco, Inge K. C. Lundstrøm, Nathan Wales, Gontran Sonet, Laurent Frantz, Hannes Schroeder, Jane Budd, Elodie-Laure Jimenez, Sergey Fedorov, Boris Gasparyan, Andrew W. Kandel, Martina Lázničková-Galetová, Hannes Napierala, Hans-Peter Uerpmann, Pavel A. Nikolskiy, Elena Y. Pavlova, Vladimir V. Pitulko, Karl-Heinz Herzig, Ripan S. Malhi, Eske Willerslev, Anders J. Hansen, Keith Dobney, M. Thomas P. Gilbert, Johannes Krause, Greger Larson, Anders Eriksson, Andrea Manica
bioRxiv 370122; doi: https://doi.org/10.1101/370122

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