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Deep-learning-based flexible pipeline for segmenting and tracking cells in 3D image time series for whole brain imaging

View ORCID ProfileChentao Wen, Takuya Miura, Yukako Fujie, Takayuki Teramoto, Takeshi Ishihara, Koutarou D. Kimura
doi: https://doi.org/10.1101/385567
Chentao Wen
1Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Osaka, Japan
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  • ORCID record for Chentao Wen
  • For correspondence: chintou.on@gmail.com
Takuya Miura
1Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Osaka, Japan
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Yukako Fujie
2RIKEN center for Advanced Intelligence Project, Tokyo, Japan
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Takayuki Teramoto
3Department of Biology, Faculty of Sciences, Kyushu University, Fukuoka, Japan
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Takeshi Ishihara
3Department of Biology, Faculty of Sciences, Kyushu University, Fukuoka, Japan
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Koutarou D. Kimura
1Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Osaka, Japan
2RIKEN center for Advanced Intelligence Project, Tokyo, Japan
3Department of Biology, Faculty of Sciences, Kyushu University, Fukuoka, Japan
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Article Information

doi 
https://doi.org/10.1101/385567
History 
  • August 6, 2018.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.

Author Information

  1. Chentao Wen1,*,
  2. Takuya Miura1,
  3. Yukako Fujie2,
  4. Takayuki Teramoto3,
  5. Takeshi Ishihara3 and
  6. Koutarou D. Kimura1,2,3
  1. 1Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Osaka, Japan
  2. 2RIKEN center for Advanced Intelligence Project, Tokyo, Japan
  3. 3Department of Biology, Faculty of Sciences, Kyushu University, Fukuoka, Japan
  4. 4Graduate School of Natural Sciences, Nagoya City University, Nagoya, Japan
  1. ↵*Correspondence:Chentao Wen chintou.on{at}gmail.com
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Posted August 06, 2018.
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Deep-learning-based flexible pipeline for segmenting and tracking cells in 3D image time series for whole brain imaging
Chentao Wen, Takuya Miura, Yukako Fujie, Takayuki Teramoto, Takeshi Ishihara, Koutarou D. Kimura
bioRxiv 385567; doi: https://doi.org/10.1101/385567
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Deep-learning-based flexible pipeline for segmenting and tracking cells in 3D image time series for whole brain imaging
Chentao Wen, Takuya Miura, Yukako Fujie, Takayuki Teramoto, Takeshi Ishihara, Koutarou D. Kimura
bioRxiv 385567; doi: https://doi.org/10.1101/385567

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