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Low-cost and clinically applicable copy number profiling using repeat DNA
View ORCID ProfileS Abujudeh, SS Zeki, MCV van Lanschot, M Pusung, JMJ Weaver, X Li, A Noorani, AJ Metz, J Bornschein, L Bower, A Miremadi, RC Fitzgerald, ER Morrissey, View ORCID ProfileAG Lynch, Oesophageal Cancer Clinical and Molecular Stratification (OCCAMS)Consortium, Rebecca C. Fitzgerald, Ayesha Noorani, Paul A.W. Edwards, Nicola Grehan, Barbara Nutzinger, Caitriona Hughes, Elwira Fidziukiewicz, Jan Bornschein, Shona MacRae, Jason Crawte, Alex Northrop, Gianmarco Contino, Xiaodun Li, Rachel de la Rue, Maria O’Donovan, Ahmad Miremadi, Shalini Malhotra, Monika Tripathi, Simon Tavaré, Andy G. Lynch, Matthew Eldridge, Maria Secrier, Lawrence Bower, Ginny Devonshire, Juliane Perner, Sriganesh Jammula, Jim Davies, Charles Crichton, Nick Carroll, Peter Safranek, Andrew Hindmarsh, Vijayendran Sujendran, Stephen J. Hayes, Yeng Ang, Shaun R. Preston, Sarah Oakes, Izhar Bagwan, Vicki Save, Richard J.E. Skipworth, Ted R. Hupp, J. Robert O’Neill, Olga Tucker, Andrew Beggs, Philippe Taniere, Sonia Puig, Timothy J. Underwood, Fergus Noble, Jack Owsley, Hugh Barr, Neil Shepherd, Oliver Old, Jesper Lagergren, James Gossage, Andrew Davies, Fuju Chang, Janine Zylstra, Ula Mahadeva, Vicky Goh, Francesca D. Ciccarelli, Grant Sanders, Richard Berrisford, Catherine Harden, Mike Lewis, Ed Cheong, Bhaskar Kumar, Simon L Parsons, Irshad Soomro, Philip Kaye, John Saunders, Laurence Lovat, Rehan Haidry, Laszlo Igali, Michael Scott, Sharmila Sothi, Sari Suortamo, Suzy Lishman, George B. Hanna, Christopher J. Peters, Anna Grabowska, Richard Turkington
doi: https://doi.org/10.1101/394429
S Abujudeh
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
SS Zeki
2Medical Research Council (MRC) Cancer Unit, University of Cambridge, Cambridge, UK
3Gastroenterology, Guy’s and St Thomas’ Hospital, London, UK
MCV van Lanschot
2Medical Research Council (MRC) Cancer Unit, University of Cambridge, Cambridge, UK
M Pusung
2Medical Research Council (MRC) Cancer Unit, University of Cambridge, Cambridge, UK
JMJ Weaver
2Medical Research Council (MRC) Cancer Unit, University of Cambridge, Cambridge, UK
4Department of Medical Oncology, The Christie NHS Foundation Trust, Manchester, M20 4TX
X Li
2Medical Research Council (MRC) Cancer Unit, University of Cambridge, Cambridge, UK
A Noorani
2Medical Research Council (MRC) Cancer Unit, University of Cambridge, Cambridge, UK
AJ Metz
2Medical Research Council (MRC) Cancer Unit, University of Cambridge, Cambridge, UK
J Bornschein
2Medical Research Council (MRC) Cancer Unit, University of Cambridge, Cambridge, UK
L Bower
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
A Miremadi
2Medical Research Council (MRC) Cancer Unit, University of Cambridge, Cambridge, UK
RC Fitzgerald
2Medical Research Council (MRC) Cancer Unit, University of Cambridge, Cambridge, UK
ER Morrissey
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
5Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK
AG Lynch
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
6School of Mathematics and Statistics/School of Medicine, University of St Andrews, St Andrews, UK
Rebecca C. Fitzgerald
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
Ayesha Noorani
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
Paul A.W. Edwards
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
2Medical Research Council (MRC) Cancer Unit, University of Cambridge, Cambridge, UK
Nicola Grehan
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
Barbara Nutzinger
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
Caitriona Hughes
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
Elwira Fidziukiewicz
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
Jan Bornschein
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
Shona MacRae
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
Jason Crawte
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
Alex Northrop
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
Gianmarco Contino
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
Xiaodun Li
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
Rachel de la Rue
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
Maria O’Donovan
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
3Gastroenterology, Guy’s and St Thomas’ Hospital, London, UK
Ahmad Miremadi
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
3Gastroenterology, Guy’s and St Thomas’ Hospital, London, UK
Shalini Malhotra
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
3Gastroenterology, Guy’s and St Thomas’ Hospital, London, UK
Monika Tripathi
1Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK
3Gastroenterology, Guy’s and St Thomas’ Hospital, London, UK
Simon Tavaré
2Medical Research Council (MRC) Cancer Unit, University of Cambridge, Cambridge, UK
Andy G. Lynch
2Medical Research Council (MRC) Cancer Unit, University of Cambridge, Cambridge, UK
Matthew Eldridge
2Medical Research Council (MRC) Cancer Unit, University of Cambridge, Cambridge, UK
Maria Secrier
2Medical Research Council (MRC) Cancer Unit, University of Cambridge, Cambridge, UK
Lawrence Bower
2Medical Research Council (MRC) Cancer Unit, University of Cambridge, Cambridge, UK
Ginny Devonshire
2Medical Research Council (MRC) Cancer Unit, University of Cambridge, Cambridge, UK
Juliane Perner
2Medical Research Council (MRC) Cancer Unit, University of Cambridge, Cambridge, UK
Sriganesh Jammula
2Medical Research Council (MRC) Cancer Unit, University of Cambridge, Cambridge, UK
Jim Davies
5Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK
Charles Crichton
5Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, UK
Nick Carroll
6School of Mathematics and Statistics/School of Medicine, University of St Andrews, St Andrews, UK
Peter Safranek
6School of Mathematics and Statistics/School of Medicine, University of St Andrews, St Andrews, UK
Andrew Hindmarsh
6School of Mathematics and Statistics/School of Medicine, University of St Andrews, St Andrews, UK
Vijayendran Sujendran
6School of Mathematics and Statistics/School of Medicine, University of St Andrews, St Andrews, UK
Stephen J. Hayes
1Medical Research Council Cancer Unit, Hutchison/Medical Research Council Research Centre, University of Cambridge, Cambridge, UK
8Wigan and Leigh NHS Foundation Trust, Wigan, Manchester, UK, WN1 2NN
Yeng Ang
1Medical Research Council Cancer Unit, Hutchison/Medical Research Council Research Centre, University of Cambridge, Cambridge, UK
2Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK
23Edinburgh University, Edinburgh, UK, EH8 9YL
Shaun R. Preston
3Department of Histopathology, Addenbrooke’s Hospital, Cambridge, UK
Sarah Oakes
3Department of Histopathology, Addenbrooke’s Hospital, Cambridge, UK
Izhar Bagwan
3Department of Histopathology, Addenbrooke’s Hospital, Cambridge, UK
Vicki Save
4Oxford ComLab, University of Oxford, UK, OX1 2JD
Richard J.E. Skipworth
4Oxford ComLab, University of Oxford, UK, OX1 2JD
Ted R. Hupp
4Oxford ComLab, University of Oxford, UK, OX1 2JD
J. Robert O’Neill
4Oxford ComLab, University of Oxford, UK, OX1 2JD
17Plymouth Hospitals NHS Trust, Plymouth, UK, PL6 8DH
Olga Tucker
5Department of Computer Science, University of Oxford, UK, OX1 3QD
27Peterborough Hospitals NHS Trust, Peterborough City Hospital, Peterborough, UK, PE3 9GZ
Andrew Beggs
5Department of Computer Science, University of Oxford, UK, OX1 3QD
22Wythenshawe Hospital, Manchester, UK, M23 9LT
Philippe Taniere
5Department of Computer Science, University of Oxford, UK, OX1 3QD
Sonia Puig
5Department of Computer Science, University of Oxford, UK, OX1 3QD
Timothy J. Underwood
6Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK, CB2 0QQ
7Salford Royal NHS Foundation Trust, Salford, UK, M6 8HD
Fergus Noble
6Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK, CB2 0QQ
Jack Owsley
6Cambridge University Hospitals NHS Foundation Trust, Cambridge, UK, CB2 0QQ
Hugh Barr
9Royal Surrey County Hospital NHS Foundation Trust, Guildford, UK, GU2 7XX
Neil Shepherd
9Royal Surrey County Hospital NHS Foundation Trust, Guildford, UK, GU2 7XX
Oliver Old
9Royal Surrey County Hospital NHS Foundation Trust, Guildford, UK, GU2 7XX
Jesper Lagergren
10Edinburgh Royal Infirmary, Edinburgh, UK, EH16 4SA
19Nottingham University Hospitals NHS Trust, Nottingham, UK, NG7 2UH
James Gossage
10Edinburgh Royal Infirmary, Edinburgh, UK, EH16 4SA
18Norfolk and Norwich University Hospital NHS Foundation Trust, Norwich, UK, NR4 7UY
Andrew Davies
10Edinburgh Royal Infirmary, Edinburgh, UK, EH16 4SA
18Norfolk and Norwich University Hospital NHS Foundation Trust, Norwich, UK, NR4 7UY
Fuju Chang
10Edinburgh Royal Infirmary, Edinburgh, UK, EH16 4SA
18Norfolk and Norwich University Hospital NHS Foundation Trust, Norwich, UK, NR4 7UY
Janine Zylstra
10Edinburgh Royal Infirmary, Edinburgh, UK, EH16 4SA
18Norfolk and Norwich University Hospital NHS Foundation Trust, Norwich, UK, NR4 7UY
Ula Mahadeva
10Edinburgh Royal Infirmary, Edinburgh, UK, EH16 4SA
Vicky Goh
18Norfolk and Norwich University Hospital NHS Foundation Trust, Norwich, UK, NR4 7UY
Francesca D. Ciccarelli
18Norfolk and Norwich University Hospital NHS Foundation Trust, Norwich, UK, NR4 7UY
Grant Sanders
11University Hospitals Birmingham NHS Foundation Trust, Birmingham, UK, B15 2GW
Richard Berrisford
11University Hospitals Birmingham NHS Foundation Trust, Birmingham, UK, B15 2GW
Catherine Harden
11University Hospitals Birmingham NHS Foundation Trust, Birmingham, UK, B15 2GW
Mike Lewis
12University Hospital Southampton NHS Foundation Trust, Southampton, UK, SO16 6YD
Ed Cheong
12University Hospital Southampton NHS Foundation Trust, Southampton, UK, SO16 6YD
Bhaskar Kumar
12University Hospital Southampton NHS Foundation Trust, Southampton, UK, SO16 6YD
Simon L Parsons
13Cancer Sciences Division, University of Southampton, Southampton, UK, SO17 1BJ
Irshad Soomro
13Cancer Sciences Division, University of Southampton, Southampton, UK, SO17 1BJ
Philip Kaye
13Cancer Sciences Division, University of Southampton, Southampton, UK, SO17 1BJ
John Saunders
13Cancer Sciences Division, University of Southampton, Southampton, UK, SO17 1BJ
Laurence Lovat
14Faculty of Medical and Human Sciences, University of Manchester, UK, M13 9PL
Rehan Haidry
14Faculty of Medical and Human Sciences, University of Manchester, UK, M13 9PL
Laszlo Igali
15Gloucester Royal Hospital, Gloucester, UK, GL1 3NN
Michael Scott
16Guy’s and St Thomas’s NHS Foundation Trust, London, UK, SE1 7EH
Sharmila Sothi
20University College London, London, UK, WC1E 6BT
Sari Suortamo
20University College London, London, UK, WC1E 6BT
Suzy Lishman
21Norfolk and Waveney Cellular Pathology Network, Norwich, UK, NR4 7UY
George B. Hanna
25Karolinska Institutet, Stockholm, Sweden, SE 77
Christopher J. Peters
25Karolinska Institutet, Stockholm, Sweden, SE 77
Anna Grabowska
26University Hospitals Coventry and Warwickshire NHS, Trust, Coventry, UK, CV2 2DX
Richard Turkington
28Institute of Cancer and Genomic sciences, University of Birmingham, B15 2TT
Article usage
Posted August 19, 2018.
Low-cost and clinically applicable copy number profiling using repeat DNA
S Abujudeh, SS Zeki, MCV van Lanschot, M Pusung, JMJ Weaver, X Li, A Noorani, AJ Metz, J Bornschein, L Bower, A Miremadi, RC Fitzgerald, ER Morrissey, AG Lynch, Oesophageal Cancer Clinical and Molecular Stratification (OCCAMS)Consortium, Rebecca C. Fitzgerald, Ayesha Noorani, Paul A.W. Edwards, Nicola Grehan, Barbara Nutzinger, Caitriona Hughes, Elwira Fidziukiewicz, Jan Bornschein, Shona MacRae, Jason Crawte, Alex Northrop, Gianmarco Contino, Xiaodun Li, Rachel de la Rue, Maria O’Donovan, Ahmad Miremadi, Shalini Malhotra, Monika Tripathi, Simon Tavaré, Andy G. Lynch, Matthew Eldridge, Maria Secrier, Lawrence Bower, Ginny Devonshire, Juliane Perner, Sriganesh Jammula, Jim Davies, Charles Crichton, Nick Carroll, Peter Safranek, Andrew Hindmarsh, Vijayendran Sujendran, Stephen J. Hayes, Yeng Ang, Shaun R. Preston, Sarah Oakes, Izhar Bagwan, Vicki Save, Richard J.E. Skipworth, Ted R. Hupp, J. Robert O’Neill, Olga Tucker, Andrew Beggs, Philippe Taniere, Sonia Puig, Timothy J. Underwood, Fergus Noble, Jack Owsley, Hugh Barr, Neil Shepherd, Oliver Old, Jesper Lagergren, James Gossage, Andrew Davies, Fuju Chang, Janine Zylstra, Ula Mahadeva, Vicky Goh, Francesca D. Ciccarelli, Grant Sanders, Richard Berrisford, Catherine Harden, Mike Lewis, Ed Cheong, Bhaskar Kumar, Simon L Parsons, Irshad Soomro, Philip Kaye, John Saunders, Laurence Lovat, Rehan Haidry, Laszlo Igali, Michael Scott, Sharmila Sothi, Sari Suortamo, Suzy Lishman, George B. Hanna, Christopher J. Peters, Anna Grabowska, Richard Turkington
bioRxiv 394429; doi: https://doi.org/10.1101/394429
Low-cost and clinically applicable copy number profiling using repeat DNA
S Abujudeh, SS Zeki, MCV van Lanschot, M Pusung, JMJ Weaver, X Li, A Noorani, AJ Metz, J Bornschein, L Bower, A Miremadi, RC Fitzgerald, ER Morrissey, AG Lynch, Oesophageal Cancer Clinical and Molecular Stratification (OCCAMS)Consortium, Rebecca C. Fitzgerald, Ayesha Noorani, Paul A.W. Edwards, Nicola Grehan, Barbara Nutzinger, Caitriona Hughes, Elwira Fidziukiewicz, Jan Bornschein, Shona MacRae, Jason Crawte, Alex Northrop, Gianmarco Contino, Xiaodun Li, Rachel de la Rue, Maria O’Donovan, Ahmad Miremadi, Shalini Malhotra, Monika Tripathi, Simon Tavaré, Andy G. Lynch, Matthew Eldridge, Maria Secrier, Lawrence Bower, Ginny Devonshire, Juliane Perner, Sriganesh Jammula, Jim Davies, Charles Crichton, Nick Carroll, Peter Safranek, Andrew Hindmarsh, Vijayendran Sujendran, Stephen J. Hayes, Yeng Ang, Shaun R. Preston, Sarah Oakes, Izhar Bagwan, Vicki Save, Richard J.E. Skipworth, Ted R. Hupp, J. Robert O’Neill, Olga Tucker, Andrew Beggs, Philippe Taniere, Sonia Puig, Timothy J. Underwood, Fergus Noble, Jack Owsley, Hugh Barr, Neil Shepherd, Oliver Old, Jesper Lagergren, James Gossage, Andrew Davies, Fuju Chang, Janine Zylstra, Ula Mahadeva, Vicky Goh, Francesca D. Ciccarelli, Grant Sanders, Richard Berrisford, Catherine Harden, Mike Lewis, Ed Cheong, Bhaskar Kumar, Simon L Parsons, Irshad Soomro, Philip Kaye, John Saunders, Laurence Lovat, Rehan Haidry, Laszlo Igali, Michael Scott, Sharmila Sothi, Sari Suortamo, Suzy Lishman, George B. Hanna, Christopher J. Peters, Anna Grabowska, Richard Turkington
bioRxiv 394429; doi: https://doi.org/10.1101/394429
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