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Forecasting seasonal influenza in the U.S.: A collaborative multi-year, multi-model assessment of forecast performance

View ORCID ProfileNicholas G Reich, View ORCID ProfileLogan Brooks, View ORCID ProfileSpencer Fox, View ORCID ProfileSasikiran Kandula, View ORCID ProfileCraig McGowan, Evan Moore, View ORCID ProfileDave Osthus, View ORCID ProfileEvan Ray, View ORCID ProfileAbhinav Tushar, View ORCID ProfileTeresa Yamana, View ORCID ProfileMatthew Biggerstaff, Michael A Johansson, Roni Rosenfeld, View ORCID ProfileJeffrey Shaman
doi: https://doi.org/10.1101/397190
Nicholas G Reich
1University of Massachusetts-Amherst, Amherst, USA
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Logan Brooks
2Carnegie Mellon University, Pittsburgh, USA
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Spencer Fox
3University of Texas at Austin, Austin, USA
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Sasikiran Kandula
4Columbia University, New York, USA
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Craig McGowan
5Influenza Division, Centers for Disease Control and Prevention, Atlanta, USA
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Evan Moore
1University of Massachusetts-Amherst, Amherst, USA
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Dave Osthus
6Los Alamos National Laboratory, Los Alamos, USA
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Evan Ray
7Mount Holyoke College, South Hadley, USA
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Abhinav Tushar
1University of Massachusetts-Amherst, Amherst, USA
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Teresa Yamana
4Columbia University, New York, USA
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Matthew Biggerstaff
5Influenza Division, Centers for Disease Control and Prevention, Atlanta, USA
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Michael A Johansson
8Division of Vector-Borne Diseases, Centers for Disease Control and Prevention, Atlanta, USA
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Roni Rosenfeld
2Carnegie Mellon University, Pittsburgh, USA
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Jeffrey Shaman
4Columbia University, New York, USA
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Abstract

Influenza infects an estimated 9 to 35 million individuals each year in the United States and is a contributing cause for between 12,000 and 56,000 deaths annually. Seasonal outbreaks of influenza are common in temperate regions of the world, with highest incidence typically occurring in colder and drier months of the year. Real-time forecasts of influenza transmission can inform public health response to outbreaks. We present the results of a multi-institution collaborative effort to standardize the collection and evaluation of forecasting models for influenza in the US for the 2010/2011 through 2016/2017 influenza seasons. For these seven seasons, we assembled weekly real-time forecasts of 7 targets of public health interest from 22 different models. We compared forecast accuracy of each model relative to a historical baseline seasonal average. Across all regions of the US, over half of the models showed consistently better performance than the historical baseline when forecasting incidence of influenza-like illness 1, 2 and 3 weeks ahead of available data and when forecasting the timing and magnitude of the seasonal peak. In some regions, delays in data reporting were strongly and negatively associated with forecast accuracy. More timely reporting and an improved overall accessibility to novel and traditional data sources are needed to improve forecasting accuracy and its integration with real-time public health decision-making.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted August 24, 2018.
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Forecasting seasonal influenza in the U.S.: A collaborative multi-year, multi-model assessment of forecast performance
Nicholas G Reich, Logan Brooks, Spencer Fox, Sasikiran Kandula, Craig McGowan, Evan Moore, Dave Osthus, Evan Ray, Abhinav Tushar, Teresa Yamana, Matthew Biggerstaff, Michael A Johansson, Roni Rosenfeld, Jeffrey Shaman
bioRxiv 397190; doi: https://doi.org/10.1101/397190
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Forecasting seasonal influenza in the U.S.: A collaborative multi-year, multi-model assessment of forecast performance
Nicholas G Reich, Logan Brooks, Spencer Fox, Sasikiran Kandula, Craig McGowan, Evan Moore, Dave Osthus, Evan Ray, Abhinav Tushar, Teresa Yamana, Matthew Biggerstaff, Michael A Johansson, Roni Rosenfeld, Jeffrey Shaman
bioRxiv 397190; doi: https://doi.org/10.1101/397190

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