e-workflow for recording of glycomic mass spectrometric data in compliance with reporting guidelines

Miguel A. Rojas-Macias; Julien Mariethoz; Peter Andersson; Chunsheng Jin; Vignesh Venkatakrishnan; Nobuyuki P. Aoki; Daisuke Shinmachi; Christopher Ashwood; Katarina Madunic; Tao Zhang; Rebecca L. Miller; Oliver Horlacher; Weston B. Struwe; Fredrik Levander; Daniel Kolarich; Pauline M. Rudd; Manfred Wuhrer; Carsten Kettner; Nicolle H. Packer; Kiyoko F. Aoki-Kinoshita; Frédérique Lisacek; Niclas G. Karlsson

doi:10.1101/401141

New Results

e-workflow for recording of glycomic mass spectrometric data in compliance with reporting guidelines

Miguel A. Rojas-Macias, Julien Mariethoz, Peter Andersson, Chunsheng Jin, Vignesh Venkatakrishnan, Nobuyuki P. Aoki, Daisuke Shinmachi, Christopher Ashwood, Katarina Madunic, Tao Zhang, Rebecca L. Miller, Oliver Horlacher, Weston B. Struwe, Fredrik Levander, Daniel Kolarich, Pauline M. Rudd, Manfred Wuhrer, Carsten Kettner, Nicolle H. Packer, Kiyoko F. Aoki-Kinoshita, Frédérique Lisacek, Niclas G. Karlsson

doi: https://doi.org/10.1101/401141

Miguel A. Rojas-Macias

1Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Julien Mariethoz

2Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland

3Computer Science Department, University of Geneva, Geneva, Switzerland

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Peter Andersson

1Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Chunsheng Jin

1Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Vignesh Venkatakrishnan

1Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Nobuyuki P. Aoki

4Soka University, Hachioji, Tokyo, Japan

5SparqLite.com, Hachioji, Tokyo, Japan

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Daisuke Shinmachi

4Soka University, Hachioji, Tokyo, Japan

5SparqLite.com, Hachioji, Tokyo, Japan

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Christopher Ashwood

6Department of Molecular Sciences, Macquarie University, Sydney, Australia

7Department of Biochemistry, Medical College of Wisconsin, Milwaukee, WI, USA

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Katarina Madunic

8Leiden University Medical Center, Leiden, Netherlands

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Tao Zhang

8Leiden University Medical Center, Leiden, Netherlands

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Rebecca L. Miller

9Department of Oncology, University of Oxford, Oxford, United Kingdom

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Oliver Horlacher

2Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Weston B. Struwe

10Department of Chemistry, Chemistry Research Laboratory, University of Oxford, Oxford, United Kingdom

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Fredrik Levander

11National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Department of Immunotechnology, Lund University, Sweden

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Daniel Kolarich

12Institute for Glycomics, Gold Coast Campus, Griffith University, Gold Coast, QLD, Australia

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Pauline M. Rudd

13University College Dublin, Belfield, Dublin, Ireland

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Manfred Wuhrer

8Leiden University Medical Center, Leiden, Netherlands

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Carsten Kettner

14Beilstein-Institut, Frankfurt am Main, Germany

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Nicolle H. Packer

12Institute for Glycomics, Gold Coast Campus, Griffith University, Gold Coast, QLD, Australia

16Macquarie University, Sydney, Australia

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Kiyoko F. Aoki-Kinoshita

4Soka University, Hachioji, Tokyo, Japan

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Frédérique Lisacek

2Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland

3Computer Science Department, University of Geneva, Geneva, Switzerland

15Section of Biology, University of Geneva, Geneva, Switzerland

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site

Niclas G. Karlsson

1Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden

Find this author on Google Scholar
Find this author on PubMed
Search for this author on this site
For correspondence: niclas.karlsson@medchem.gu.se

Abstract
Full Text
Info/History
Metrics
Supplementary material
Preview PDF

Description of MIRAGE parameters
MIRAGE Spread sheet
MIRAGE Glycoworkbench file, opens as .gwp
Treatment and orthogonal methods for MIRAGE

View the discussion thread.

PreviousNext

Posted August 27, 2018.

Download PDF

Supplementary Material

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Your Email *

Your Name *

Send To *

Enter multiple addresses on separate lines or separate them with commas.

You are going to email the following e-workflow for recording of glycomic mass spectrometric data in compliance with reporting guidelines

Message Subject (Your Name) has forwarded a page to you from bioRxiv

Message Body (Your Name) thought you would like to see this page from the bioRxiv website.

Your Personal Message

CAPTCHA

This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.

e-workflow for recording of glycomic mass spectrometric data in compliance with reporting guidelines

bioRxiv 401141; doi: https://doi.org/10.1101/401141

Share This Article:

Citation Tools

e-workflow for recording of glycomic mass spectrometric data in compliance with reporting guidelines

bioRxiv 401141; doi: https://doi.org/10.1101/401141

Citation Manager Formats

BibTeX
Bookends
EasyBib
EndNote (tagged)
EndNote 8 (xml)
Medlars
Mendeley
Papers
RefWorks Tagged
Ref Manager
RIS
Zotero

Tweet Widget
Facebook Like
Google Plus One

Subject Areas

All Articles

Animal Behavior and Cognition (2533)
Biochemistry (4977)
Bioengineering (3486)
Bioinformatics (15231)
Biophysics (6910)
Cancer Biology (5395)
Cell Biology (7753)
Clinical Trials (138)
Developmental Biology (4539)
Ecology (7159)
Epidemiology (2059)
Evolutionary Biology (10234)
Genetics (7517)
Genomics (9793)
Immunology (4860)
Microbiology (13234)
Molecular Biology (5144)
Neuroscience (29465)
Paleontology (203)
Pathology (838)
Pharmacology and Toxicology (1465)
Physiology (2142)
Plant Biology (4756)
Scientific Communication and Education (1013)
Synthetic Biology (1338)
Systems Biology (4014)
Zoology (768)