Lineage calling can identify antibiotic resistant clones within minutes

Karel Břinda; Alanna Callendrello; Lauren Cowley; Themoula Charalampous; Robyn S Lee; Derek R MacFadden; Gregory Kucherov; Justin O’Grady; Michael Baym; William P Hanage

doi:10.1101/403204

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Lineage calling can identify antibiotic resistant clones within minutes

View ORCID ProfileKarel Břinda, Alanna Callendrello, Lauren Cowley, Themoula Charalampous, Robyn S Lee, Derek R MacFadden, Gregory Kucherov, Justin O’Grady, Michael Baym, William P Hanage

doi: https://doi.org/10.1101/403204

Karel Břinda

1Center for Communicable Disease Dynamic, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, USA

2Department of Biomedical Informatics, Harvard Medical School, Boston, USA

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ORCID record for Karel Břinda

Alanna Callendrello

1Center for Communicable Disease Dynamic, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, USA

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Lauren Cowley

1Center for Communicable Disease Dynamic, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, USA

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Themoula Charalampous

3University of East Anglia, Norwich Research Park, Norwich, UK

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Robyn S Lee

1Center for Communicable Disease Dynamic, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, USA

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Derek R MacFadden

1Center for Communicable Disease Dynamic, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, USA

4Division of Infectious Diseases, Department of Medicine, University of Toronto, Canada

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Gregory Kucherov

5CNRS/LIGM Université Paris-Est, Marne-la-Vallée, France

6Skolkovo Institute of Science and Technology, Moscow, Russia

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Justin O’Grady

7Quadram Institute Bioscience, Norwich Research Park, Norwich, UK

3University of East Anglia, Norwich Research Park, Norwich, UK

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Michael Baym

2Department of Biomedical Informatics, Harvard Medical School, Boston, USA

8Laboratory of Systems Pharmacology, Harvard Medical School, Boston, USA

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William P Hanage

1Center for Communicable Disease Dynamic, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, USA

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Posted August 29, 2018.

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Lineage calling can identify antibiotic resistant clones within minutes

Karel Břinda, Alanna Callendrello, Lauren Cowley, Themoula Charalampous, Robyn S Lee, Derek R MacFadden, Gregory Kucherov, Justin O’Grady, Michael Baym, William P Hanage

bioRxiv 403204; doi: https://doi.org/10.1101/403204

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Lineage calling can identify antibiotic resistant clones within minutes

Karel Břinda, Alanna Callendrello, Lauren Cowley, Themoula Charalampous, Robyn S Lee, Derek R MacFadden, Gregory Kucherov, Justin O’Grady, Michael Baym, William P Hanage

bioRxiv 403204; doi: https://doi.org/10.1101/403204

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