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PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud
View ORCID ProfileKristian Peters, James Bradbury, Sven Bergmann, Marco Capuccini, View ORCID ProfileMarta Cascante, View ORCID ProfilePedro de Atauri, Timothy M D Ebbels, View ORCID ProfileCarles Foguet, Robert Glen, View ORCID ProfileAlejandra Gonzalez-Beltran, Evangelos Handakas, View ORCID ProfileThomas Hankemeier, View ORCID ProfileKenneth Haug, View ORCID ProfileStephanie Herman, View ORCID ProfileMassimiliano Izzo, Daniel Jacob, View ORCID ProfileDavid Johnson, Fabien Jourdan, View ORCID ProfileNamrata Kale, View ORCID ProfilePetr Holub, View ORCID ProfileIbrahim Karaman, Bita Khalili, View ORCID ProfilePayam Emami Khonsari, View ORCID ProfileKim Kultima, View ORCID ProfileSamuel Lampa, View ORCID ProfileAnders Larsson, View ORCID ProfilePablo Moreno, View ORCID ProfileSteffen Neumann, Jon Ander Novella, View ORCID ProfileClaire O’Donovan, View ORCID ProfileJake TM Pearce, View ORCID ProfileAlina Peluso, View ORCID ProfileLuca Pireddu, View ORCID ProfileMarco Enrico Piras, View ORCID ProfileMichelle AC Reed, View ORCID ProfilePhilippe Rocca-Serra, Pierrick Roger, View ORCID ProfileAntonio Rosato, View ORCID ProfileRico Rueedi, View ORCID ProfileChristoph Ruttkies, View ORCID ProfileNoureddin Sadawi, View ORCID ProfileReza M Salek, View ORCID ProfileSusanna-Assunta Sansone, View ORCID ProfileVitaly Selivanov, View ORCID ProfileOla Spjuth, View ORCID ProfileDaniel Schober, View ORCID ProfileEtienne A. Thévenot, Mattia Tomasoni, View ORCID ProfileMerlijn van Rijswijk, View ORCID ProfileMichael van Vliet, View ORCID ProfileMark R Viant, Ralf J. M. Weber, View ORCID ProfileGianluigi Zanetti, View ORCID ProfileChristoph Steinbeck
doi: https://doi.org/10.1101/409151
Kristian Peters
1Leibniz Institute of Plant Biochemistry, Stress and Developmental Biology, Weinberg 3, 06120 Halle (Saale), Germany
James Bradbury
2School of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United Kingdom
Sven Bergmann
3Department of Computational Biology, University of Lausanne, Lausanne, Switzerland
4Swiss Institute of Bioinformatics, Lausanne, Switzerland
Marco Capuccini
5Division of Scientific Computing, Department of Information Technology, Uppsala University, Sweden
6Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24 Uppsala, Sweden
Marta Cascante
7Department of Biochemistry and Molecular Biomedicine, Universitat de Barcelona; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas
Pedro de Atauri
8Department of Biochemistry and Molecular Biomedicine, Universitat de Barcelona; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBEREHD), Instituto de Salud Carlos III (ISCIII), Spain
Timothy M D Ebbels
9Department of Surgery & Cancer, Imperial College London, South Kensington, London, SW7 2AZ, United Kingdom
Carles Foguet
8Department of Biochemistry and Molecular Biomedicine, Universitat de Barcelona; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBEREHD), Instituto de Salud Carlos III (ISCIII), Spain
Robert Glen
9Department of Surgery & Cancer, Imperial College London, South Kensington, London, SW7 2AZ, United Kingdom
10Centre for Molecular Informatics, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB21EW, United Kingdom
Alejandra Gonzalez-Beltran
11Oxford e-Research Centre, Department of Engineering Science, University of Oxford, 7 Keble Road, OX1 3QG, Oxford, UK.
Evangelos Handakas
9Department of Surgery & Cancer, Imperial College London, South Kensington, London, SW7 2AZ, United Kingdom
Thomas Hankemeier
12Netherlands Metabolomics Center, Leiden, 2333 CC, Netherlands
13Division of Systems Biomedicine and Pharmacology, Leiden Academic Centre for Drug
Kenneth Haug
14European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK
Stephanie Herman
15Department of Medical Sciences, Clinical Chemistry, Uppsala University, 751 85 Uppsala, Sweden
Massimiliano Izzo
11Oxford e-Research Centre, Department of Engineering Science, University of Oxford, 7 Keble Road, OX1 3QG, Oxford, UK.
Daniel Jacob
16INRA, University of Bordeaux, Plateforme Métabolome Bordeaux-MetaboHUB, 33140 Villenave d’Ornon, France
David Johnson
11Oxford e-Research Centre, Department of Engineering Science, University of Oxford, 7 Keble Road, OX1 3QG, Oxford, UK.
Fabien Jourdan
17INRA - French National Institute for Agricultural Research, UMR1331, Toxalim, Research Centre in Food Toxicology, Toulouse, France
Namrata Kale
14European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK
Petr Holub
29BBMRI-ERIC, Graz, Austria
Ibrahim Karaman
18Department of Epidemiology and Biostatistics, School of Public Health, Imperial College London, St. Mary’s Campus, Norfolk Place, W2 1PG, London, United Kingdom
Bita Khalili
3Department of Computational Biology, University of Lausanne, Lausanne, Switzerland
4Swiss Institute of Bioinformatics, Lausanne, Switzerland
Payam Emami Khonsari
15Department of Medical Sciences, Clinical Chemistry, Uppsala University, 751 85 Uppsala, Sweden
Kim Kultima
15Department of Medical Sciences, Clinical Chemistry, Uppsala University, 751 85 Uppsala, Sweden
Samuel Lampa
6Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24 Uppsala, Sweden
Anders Larsson
19National Bioinformatics Infrastructure Sweden, Uppsala University, Uppsala, Sweden Department of Pharmaceutical Biosciences, Uppsala University, Uppsala, Sweden
Pablo Moreno
14European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK
Steffen Neumann
1Leibniz Institute of Plant Biochemistry, Stress and Developmental Biology, Weinberg 3, 06120 Halle (Saale), Germany
20German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, 04103 Leipzig, Germany
Jon Ander Novella
19National Bioinformatics Infrastructure Sweden, Uppsala University, Uppsala, Sweden Department of Pharmaceutical Biosciences, Uppsala University, Uppsala, Sweden
Claire O’Donovan
14European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK
Jake TM Pearce
9Department of Surgery & Cancer, Imperial College London, South Kensington, London, SW7 2AZ, United Kingdom
Alina Peluso
9Department of Surgery & Cancer, Imperial College London, South Kensington, London, SW7 2AZ, United Kingdom
Luca Pireddu
21Distributed Computing Group, CRS4, Pula, Italy
Marco Enrico Piras
21Distributed Computing Group, CRS4, Pula, Italy
Michelle AC Reed
22College of Medical and Dental Sciences, University of Birmingham, Edgbaston, Birmingham, B152TT, United Kingdom
Philippe Rocca-Serra
11Oxford e-Research Centre, Department of Engineering Science, University of Oxford, 7 Keble Road, OX1 3QG, Oxford, UK.
Pierrick Roger
23CEA, LIST, Laboratory for Data Analysis and Systems’ Intelligence, MetaboHUB, Gif-Sur-Yvette F-91191, France
Antonio Rosato
24Magnetic Resonance Center (CERM) and Department of Chemistry, University of Florence and CIRMMP, 50019 Sesto Fiorentino, Florence, Italy
Rico Rueedi
3Department of Computational Biology, University of Lausanne, Lausanne, Switzerland
4Swiss Institute of Bioinformatics, Lausanne, Switzerland
Christoph Ruttkies
1Leibniz Institute of Plant Biochemistry, Stress and Developmental Biology, Weinberg 3, 06120 Halle (Saale), Germany
Noureddin Sadawi
9Department of Surgery & Cancer, Imperial College London, South Kensington, London, SW7 2AZ, United Kingdom
Reza M Salek
25European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, U.K.
Susanna-Assunta Sansone
11Oxford e-Research Centre, Department of Engineering Science, University of Oxford, 7 Keble Road, OX1 3QG, Oxford, UK.
Vitaly Selivanov
8Department of Biochemistry and Molecular Biomedicine, Universitat de Barcelona; Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBEREHD), Instituto de Salud Carlos III (ISCIII), Spain
Ola Spjuth
6Department of Pharmaceutical Biosciences, Uppsala University, Box 591, 751 24 Uppsala, Sweden
Daniel Schober
1Leibniz Institute of Plant Biochemistry, Stress and Developmental Biology, Weinberg 3, 06120 Halle (Saale), Germany
Etienne A. Thévenot
23CEA, LIST, Laboratory for Data Analysis and Systems’ Intelligence, MetaboHUB, Gif-Sur-Yvette F-91191, France
Mattia Tomasoni
3Department of Computational Biology, University of Lausanne, Lausanne, Switzerland
4Swiss Institute of Bioinformatics, Lausanne, Switzerland
Merlijn van Rijswijk
26ELIXIR-NL, Dutch Techcentre for Life Sciences, Utrecht, 3503 RM, Netherlands
27Netherlands Metabolomics Center, Leiden, 2333 CC, The Netherlands
Michael van Vliet
28Division of Systems Biomedicine and Pharmacology, Leiden Academic Centre for Drug Research (LACDR), Leiden University, Leiden, 2333 CC, The Netherlands
Mark R Viant
2School of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United Kingdom
Ralf J. M. Weber
2School of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United Kingdom
Gianluigi Zanetti
21Distributed Computing Group, CRS4, Pula, Italy
Christoph Steinbeck
30Cheminformatics and Computational Metabolomics, Institute for Analytical Chemistry, Lessingstr. 8, 07743 Jena, Germany
Article usage
Posted September 06, 2018.
PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud
Kristian Peters, James Bradbury, Sven Bergmann, Marco Capuccini, Marta Cascante, Pedro de Atauri, Timothy M D Ebbels, Carles Foguet, Robert Glen, Alejandra Gonzalez-Beltran, Evangelos Handakas, Thomas Hankemeier, Kenneth Haug, Stephanie Herman, Massimiliano Izzo, Daniel Jacob, David Johnson, Fabien Jourdan, Namrata Kale, Petr Holub, Ibrahim Karaman, Bita Khalili, Payam Emami Khonsari, Kim Kultima, Samuel Lampa, Anders Larsson, Pablo Moreno, Steffen Neumann, Jon Ander Novella, Claire O’Donovan, Jake TM Pearce, Alina Peluso, Luca Pireddu, Marco Enrico Piras, Michelle AC Reed, Philippe Rocca-Serra, Pierrick Roger, Antonio Rosato, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M Salek, Susanna-Assunta Sansone, Vitaly Selivanov, Ola Spjuth, Daniel Schober, Etienne A. Thévenot, Mattia Tomasoni, Merlijn van Rijswijk, Michael van Vliet, Mark R Viant, Ralf J. M. Weber, Gianluigi Zanetti, Christoph Steinbeck
bioRxiv 409151; doi: https://doi.org/10.1101/409151
PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud
Kristian Peters, James Bradbury, Sven Bergmann, Marco Capuccini, Marta Cascante, Pedro de Atauri, Timothy M D Ebbels, Carles Foguet, Robert Glen, Alejandra Gonzalez-Beltran, Evangelos Handakas, Thomas Hankemeier, Kenneth Haug, Stephanie Herman, Massimiliano Izzo, Daniel Jacob, David Johnson, Fabien Jourdan, Namrata Kale, Petr Holub, Ibrahim Karaman, Bita Khalili, Payam Emami Khonsari, Kim Kultima, Samuel Lampa, Anders Larsson, Pablo Moreno, Steffen Neumann, Jon Ander Novella, Claire O’Donovan, Jake TM Pearce, Alina Peluso, Luca Pireddu, Marco Enrico Piras, Michelle AC Reed, Philippe Rocca-Serra, Pierrick Roger, Antonio Rosato, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M Salek, Susanna-Assunta Sansone, Vitaly Selivanov, Ola Spjuth, Daniel Schober, Etienne A. Thévenot, Mattia Tomasoni, Merlijn van Rijswijk, Michael van Vliet, Mark R Viant, Ralf J. M. Weber, Gianluigi Zanetti, Christoph Steinbeck
bioRxiv 409151; doi: https://doi.org/10.1101/409151
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