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Transite: A computational motif-based analysis platform that identifies RNA-binding proteins modulating changes in gene expression
View ORCID ProfileKonstantin Krismer, View ORCID ProfileShohreh Varmeh, View ORCID ProfileMolly A. Bird, View ORCID ProfileAnna Gattinger, View ORCID ProfileYi Wen Kong, View ORCID ProfileThomas Bernwinkler, View ORCID ProfileDaniel A. Anderson, View ORCID ProfileAndreas Heinzel, View ORCID ProfileBrian A. Joughin, View ORCID ProfileIan G. Cannell, View ORCID ProfileMichael B. Yaffe
doi: https://doi.org/10.1101/416743
Konstantin Krismer
1Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, 32 Vassar Street, Cambridge, MA 02139, USA
2Center for Precision Cancer Medicine, Massachusetts Institute of Technology, 500 Main Street, Cambridge, MA 02139, USA
3David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, 500 Main Street, Cambridge, MA 02139, USA
5Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA
7Department for Medical and Bioinformatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria
Shohreh Varmeh
2Center for Precision Cancer Medicine, Massachusetts Institute of Technology, 500 Main Street, Cambridge, MA 02139, USA
3David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, 500 Main Street, Cambridge, MA 02139, USA
Molly A. Bird
2Center for Precision Cancer Medicine, Massachusetts Institute of Technology, 500 Main Street, Cambridge, MA 02139, USA
3David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, 500 Main Street, Cambridge, MA 02139, USA
5Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA
Anna Gattinger
3David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, 500 Main Street, Cambridge, MA 02139, USA
7Department for Medical and Bioinformatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria
Yi Wen Kong
2Center for Precision Cancer Medicine, Massachusetts Institute of Technology, 500 Main Street, Cambridge, MA 02139, USA
3David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, 500 Main Street, Cambridge, MA 02139, USA
Thomas Bernwinkler
2Center for Precision Cancer Medicine, Massachusetts Institute of Technology, 500 Main Street, Cambridge, MA 02139, USA
3David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, 500 Main Street, Cambridge, MA 02139, USA
7Department for Medical and Bioinformatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria
Daniel A. Anderson
4Synthetic Biology Center, Massachusetts Institute of Technology, 500 Technology Square, Cambridge, MA 02139, USA
5Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA
Andreas Heinzel
7Department for Medical and Bioinformatics, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria
Brian A. Joughin
2Center for Precision Cancer Medicine, Massachusetts Institute of Technology, 500 Main Street, Cambridge, MA 02139, USA
3David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, 500 Main Street, Cambridge, MA 02139, USA
Ian G. Cannell
2Center for Precision Cancer Medicine, Massachusetts Institute of Technology, 500 Main Street, Cambridge, MA 02139, USA
3David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, 500 Main Street, Cambridge, MA 02139, USA
8New York Genome Center, 101 Avenue of the Americas, New York, NY 10013, USA
Michael B. Yaffe
2Center for Precision Cancer Medicine, Massachusetts Institute of Technology, 500 Main Street, Cambridge, MA 02139, USA
3David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, 500 Main Street, Cambridge, MA 02139, USA
5Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA
6Broad Institute of MIT and Harvard, 415 Main Street, Cambridge, MA 02142, USA
Posted September 14, 2018.
Transite: A computational motif-based analysis platform that identifies RNA-binding proteins modulating changes in gene expression
Konstantin Krismer, Shohreh Varmeh, Molly A. Bird, Anna Gattinger, Yi Wen Kong, Thomas Bernwinkler, Daniel A. Anderson, Andreas Heinzel, Brian A. Joughin, Ian G. Cannell, Michael B. Yaffe
bioRxiv 416743; doi: https://doi.org/10.1101/416743
Transite: A computational motif-based analysis platform that identifies RNA-binding proteins modulating changes in gene expression
Konstantin Krismer, Shohreh Varmeh, Molly A. Bird, Anna Gattinger, Yi Wen Kong, Thomas Bernwinkler, Daniel A. Anderson, Andreas Heinzel, Brian A. Joughin, Ian G. Cannell, Michael B. Yaffe
bioRxiv 416743; doi: https://doi.org/10.1101/416743
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