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An Alternative Framework for Fluorescence Correlation Spectroscopy

View ORCID ProfileSina Jazani, View ORCID ProfileIoannis Sgouralis, Omer M. Shafraz, Marcia Levitus, View ORCID ProfileSanjeevi Sivasankar, Steve Pressé
doi: https://doi.org/10.1101/426114
Sina Jazani
1Center for Biological Physics, Arizona State University, Tempe, AZ 85287
2Department of Physics, Arizona State University, Tempe, AZ 85287
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  • ORCID record for Sina Jazani
Ioannis Sgouralis
1Center for Biological Physics, Arizona State University, Tempe, AZ 85287
2Department of Physics, Arizona State University, Tempe, AZ 85287
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Omer M. Shafraz
3Department of Biomedical Engineering, University of California, Davis, CA 95616
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Marcia Levitus
1Center for Biological Physics, Arizona State University, Tempe, AZ 85287
4School of Molecular Sciences, Arizona State University, Tempe, AZ 85287
5Biodesign Institute, Arizona State University, Tempe, AZ 85287
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Sanjeevi Sivasankar
3Department of Biomedical Engineering, University of California, Davis, CA 95616
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Steve Pressé
1Center for Biological Physics, Arizona State University, Tempe, AZ 85287
2Department of Physics, Arizona State University, Tempe, AZ 85287
4School of Molecular Sciences, Arizona State University, Tempe, AZ 85287
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  • For correspondence: spresse@asu.edu
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ABSTRACT

Fluorescence correlation spectroscopy (FCS), is a flexible and widely used tool routinely exploited for in vivo and in vitro applications. While FCS provides estimates of dynamical quantities, such as diffusion coefficients, it demands high signal to noise ratios and long time traces, typically in the minute range. In principle, the same information can be extracted from µ-s long time traces; however, an appropriate analysis method is missing. To overcome these limitations, we adapt novel tools inspired by Bayesian non-parametrics, which starts from the direct analysis of the observed photon counts. With this approach, we are able to analyze time traces, which are too short to be analyzed by existing methods, including FCS. Our new analysis extends the capability of single molecule fluorescence confocal microscopy based approaches, to probe processes several orders of magnitude faster in time and permits a reduction of phototoxic effects on living samples induced by long periods of light exposure.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted April 16, 2019.
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An Alternative Framework for Fluorescence Correlation Spectroscopy
Sina Jazani, Ioannis Sgouralis, Omer M. Shafraz, Marcia Levitus, Sanjeevi Sivasankar, Steve Pressé
bioRxiv 426114; doi: https://doi.org/10.1101/426114
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An Alternative Framework for Fluorescence Correlation Spectroscopy
Sina Jazani, Ioannis Sgouralis, Omer M. Shafraz, Marcia Levitus, Sanjeevi Sivasankar, Steve Pressé
bioRxiv 426114; doi: https://doi.org/10.1101/426114

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