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Harmonization of resting-state functional MRI data across multiple imaging sites via the separation of site differences into sampling bias and measurement bias

View ORCID ProfileAyumu Yamashita, Noriaki Yahata, Takashi Itahashi, Giuseppe Lisi, Takashi Yamada, Naho Ichikawa, Masahiro Takamura, Yujiro Yoshihara, Akira Kunimatsu, Naohiro Okada, Hirotaka Yamagata, Koji Matsuo, Ryuichiro Hashimoto, Go Okada, Yuki Sakai, Jun Morimoto, Jin Narumoto, Yasuhiro Shimada, Kiyoto Kasai, Nobumasa Kato, Hidehiko Takahashi, Yasumasa Okamoto, Saori C Tanaka, Mitsuo Kawato, Okito Yamashita, Hiroshi Imamizu
doi: https://doi.org/10.1101/440875
Ayumu Yamashita
1Brain Information Communication Research Laboratory Group, Advanced Telecommunications Research Institutes International, Kyoto, Japan
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  • ORCID record for Ayumu Yamashita
  • For correspondence: [email protected] [email protected] [email protected]
Noriaki Yahata
1Brain Information Communication Research Laboratory Group, Advanced Telecommunications Research Institutes International, Kyoto, Japan
2Department of Neuropsychiatry, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
3Department of Molecular Imaging and Theranostics, National Institute of Radiological Sciences, National Institutes for Quantum and Radiological Science and Technology, Chiba, Japan
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Takashi Itahashi
4Medical Institute of Developmental Disabilities Research, Showa University, Tokyo, Japan
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Giuseppe Lisi
1Brain Information Communication Research Laboratory Group, Advanced Telecommunications Research Institutes International, Kyoto, Japan
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Takashi Yamada
1Brain Information Communication Research Laboratory Group, Advanced Telecommunications Research Institutes International, Kyoto, Japan
4Medical Institute of Developmental Disabilities Research, Showa University, Tokyo, Japan
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Naho Ichikawa
5Department of Psychiatry and Neurosciences, Hiroshima University, Hiroshima, Japan
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Masahiro Takamura
5Department of Psychiatry and Neurosciences, Hiroshima University, Hiroshima, Japan
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Yujiro Yoshihara
6Department of Psychiatry, Kyoto University Graduate School of Medicine, Kyoto, Japan
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Akira Kunimatsu
7Department of Radiology, IMSUT Hospital, Institute of Medical Science, The University of Tokyo, Tokyo, Japan
8Department of Radiology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
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Naohiro Okada
2Department of Neuropsychiatry, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
9The International Research Center for Neurointelligence (WPI-IRCN) at the University of Tokyo Institutes for Advanced Study (UTIAS), Tokyo, Japan
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Hirotaka Yamagata
10Division of Neuropsychiatry, Department of Neuroscience, Yamaguchi University Graduate School of Medicine, Yamaguchi, Japan
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Koji Matsuo
10Division of Neuropsychiatry, Department of Neuroscience, Yamaguchi University Graduate School of Medicine, Yamaguchi, Japan
11Department of Psychiatry, Faculty of Medicine, Saitama Medical University, Saitama, Japan
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Ryuichiro Hashimoto
1Brain Information Communication Research Laboratory Group, Advanced Telecommunications Research Institutes International, Kyoto, Japan
4Medical Institute of Developmental Disabilities Research, Showa University, Tokyo, Japan
12Department of Language Sciences, Tokyo Metropolitan University, Tokyo, Japan
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Go Okada
5Department of Psychiatry and Neurosciences, Hiroshima University, Hiroshima, Japan
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Yuki Sakai
1Brain Information Communication Research Laboratory Group, Advanced Telecommunications Research Institutes International, Kyoto, Japan
13Department of Psychiatry, Graduate School of Medical Science, Kyoto Prefectural University of Medicine, Kyoto, Japan
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Jun Morimoto
1Brain Information Communication Research Laboratory Group, Advanced Telecommunications Research Institutes International, Kyoto, Japan
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Jin Narumoto
1Brain Information Communication Research Laboratory Group, Advanced Telecommunications Research Institutes International, Kyoto, Japan
13Department of Psychiatry, Graduate School of Medical Science, Kyoto Prefectural University of Medicine, Kyoto, Japan
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Yasuhiro Shimada
14Brain Activity Imaging Center, ATR-Promotions Inc., Kyoto, Japan
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Kiyoto Kasai
1Brain Information Communication Research Laboratory Group, Advanced Telecommunications Research Institutes International, Kyoto, Japan
2Department of Neuropsychiatry, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
9The International Research Center for Neurointelligence (WPI-IRCN) at the University of Tokyo Institutes for Advanced Study (UTIAS), Tokyo, Japan
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Nobumasa Kato
1Brain Information Communication Research Laboratory Group, Advanced Telecommunications Research Institutes International, Kyoto, Japan
4Medical Institute of Developmental Disabilities Research, Showa University, Tokyo, Japan
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Hidehiko Takahashi
6Department of Psychiatry, Kyoto University Graduate School of Medicine, Kyoto, Japan
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Yasumasa Okamoto
5Department of Psychiatry and Neurosciences, Hiroshima University, Hiroshima, Japan
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Saori C Tanaka
1Brain Information Communication Research Laboratory Group, Advanced Telecommunications Research Institutes International, Kyoto, Japan
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Mitsuo Kawato
1Brain Information Communication Research Laboratory Group, Advanced Telecommunications Research Institutes International, Kyoto, Japan
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Okito Yamashita
1Brain Information Communication Research Laboratory Group, Advanced Telecommunications Research Institutes International, Kyoto, Japan
15Center for Advanced Intelligence Project, RIKEN, Tokyo, Japan
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  • For correspondence: [email protected] [email protected] [email protected]
Hiroshi Imamizu
1Brain Information Communication Research Laboratory Group, Advanced Telecommunications Research Institutes International, Kyoto, Japan
16Department of Psychology, Graduate School of Humanities and Sociology, The University of Tokyo, Tokyo, Japan
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  • For correspondence: [email protected] [email protected] [email protected]
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Abstract

When collecting large neuroimaging data associated with psychiatric disorders, images must be acquired from multiple sites because of the limited capacity of a single site. However, site differences represent the greatest barrier when acquiring multi-site neuroimaging data. We utilized a traveling-subject dataset in conjunction with a multi-site, multi-disorder dataset to demonstrate that site differences are composed of biological sampling bias and engineering measurement bias. Effects on resting-state functional MRI connectivity because of both bias types were greater than or equal to those because of psychiatric disorders. Furthermore, our findings indicated that each site can sample only from among a subpopulation of participants. This result suggests that it is essential to collect large neuroimaging data from as many sites as possible to appropriately estimate the distribution of the grand population. Finally, we developed a novel harmonization method that removed only the measurement bias by using traveling-subject dataset and achieved the reduction of the measurement bias by 29% and the improvement of the signal to noise ratios by 40%.

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Posted October 11, 2018.
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Harmonization of resting-state functional MRI data across multiple imaging sites via the separation of site differences into sampling bias and measurement bias
Ayumu Yamashita, Noriaki Yahata, Takashi Itahashi, Giuseppe Lisi, Takashi Yamada, Naho Ichikawa, Masahiro Takamura, Yujiro Yoshihara, Akira Kunimatsu, Naohiro Okada, Hirotaka Yamagata, Koji Matsuo, Ryuichiro Hashimoto, Go Okada, Yuki Sakai, Jun Morimoto, Jin Narumoto, Yasuhiro Shimada, Kiyoto Kasai, Nobumasa Kato, Hidehiko Takahashi, Yasumasa Okamoto, Saori C Tanaka, Mitsuo Kawato, Okito Yamashita, Hiroshi Imamizu
bioRxiv 440875; doi: https://doi.org/10.1101/440875
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Harmonization of resting-state functional MRI data across multiple imaging sites via the separation of site differences into sampling bias and measurement bias
Ayumu Yamashita, Noriaki Yahata, Takashi Itahashi, Giuseppe Lisi, Takashi Yamada, Naho Ichikawa, Masahiro Takamura, Yujiro Yoshihara, Akira Kunimatsu, Naohiro Okada, Hirotaka Yamagata, Koji Matsuo, Ryuichiro Hashimoto, Go Okada, Yuki Sakai, Jun Morimoto, Jin Narumoto, Yasuhiro Shimada, Kiyoto Kasai, Nobumasa Kato, Hidehiko Takahashi, Yasumasa Okamoto, Saori C Tanaka, Mitsuo Kawato, Okito Yamashita, Hiroshi Imamizu
bioRxiv 440875; doi: https://doi.org/10.1101/440875

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