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Cryo-EM structures and functional characterization of the lipid scramblase TMEM16F

View ORCID ProfileCarolina Alvadia, View ORCID ProfileNovandy K. Lim, View ORCID ProfileVanessa Clerico Mosina, View ORCID ProfileGert T. Oostergetel, View ORCID ProfileRaimund Dutzler, Cristina Paulino
doi: https://doi.org/10.1101/455261
Carolina Alvadia
1Department of Biochemistry University of Zürich, Winterthurer Str. 190, CH-8057 Zürich, Switzerland
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  • ORCID record for Carolina Alvadia
Novandy K. Lim
1Department of Biochemistry University of Zürich, Winterthurer Str. 190, CH-8057 Zürich, Switzerland
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Vanessa Clerico Mosina
2Department of Structural Biology at the Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
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Gert T. Oostergetel
2Department of Structural Biology at the Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
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Raimund Dutzler
1Department of Biochemistry University of Zürich, Winterthurer Str. 190, CH-8057 Zürich, Switzerland
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  • For correspondence: dutzler@bioc.uzh.ch c.paulino@rug.nl
Cristina Paulino
2Department of Structural Biology at the Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
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  • For correspondence: dutzler@bioc.uzh.ch c.paulino@rug.nl
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SUMMARY

The lipid scramblase TMEM16F initiates blood coagulation by catalyzing the exposure of phosphatidylserine in platelets. The protein is part of a family of membrane proteins, which encompasses calcium-activated channels for ions and lipids. Here, we reveal features of TMEM16F that underlie its function as lipid scramblase and ion channel. The cryo-EM structures of TMEM16F in Ca2+-bound and Ca2+-free states display a striking similarity to the scrambling-incompetent anion channel TMEM16A, yet with distinct differences in the catalytic site and in the conformational changes upon activation. In conjunction with functional data, we demonstrate the relationship between ion conduction and lipid scrambling. Although activated by a common mechanism, which likely resembles an equivalent process defined in the homologue nhTMEM16, both functions appear to be mediated by alternate protein conformations, which are at equilibrium in the ligand-bound state.

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Posted October 29, 2018.
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Cryo-EM structures and functional characterization of the lipid scramblase TMEM16F
Carolina Alvadia, Novandy K. Lim, Vanessa Clerico Mosina, Gert T. Oostergetel, Raimund Dutzler, Cristina Paulino
bioRxiv 455261; doi: https://doi.org/10.1101/455261
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Cryo-EM structures and functional characterization of the lipid scramblase TMEM16F
Carolina Alvadia, Novandy K. Lim, Vanessa Clerico Mosina, Gert T. Oostergetel, Raimund Dutzler, Cristina Paulino
bioRxiv 455261; doi: https://doi.org/10.1101/455261

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