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Common garden experiment reveals altered nutritional values and DNA methylation profiles in micropropagated three elite Ghanaian sweet potato genotypes

Belinda Akomeah, Marian D. Quain, Sunita A. Ramesh, View ORCID ProfileCarlos M. Rodríguez López
doi: https://doi.org/10.1101/471623
Belinda Akomeah
1ARC Centre of Excellence in Plant Energy Biology, University of Adelaide, Waite Campus, PMB1 Glen Osmond, SA, 5064
2The Waite Research Institute and The School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, PMB1 Glen Osmond, SA, 5064
3CSIR-Crops Research Institute, P. O. Box 3785, Kumasi, Ghana
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Marian D. Quain
3CSIR-Crops Research Institute, P. O. Box 3785, Kumasi, Ghana
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Sunita A. Ramesh
1ARC Centre of Excellence in Plant Energy Biology, University of Adelaide, Waite Campus, PMB1 Glen Osmond, SA, 5064
2The Waite Research Institute and The School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, PMB1 Glen Osmond, SA, 5064
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Carlos M. Rodríguez López
2The Waite Research Institute and The School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, PMB1 Glen Osmond, SA, 5064
4Environmental Epigenetics and Genetics Group, Department of Horticulture, College of Agriculture, Food and Environment, University of Kentucky, Lexington, KY, USA
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  • ORCID record for Carlos M. Rodríguez López
  • For correspondence: carlos.rodriguezlopez@uky.edu
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Abstract

Micronutrient deficiency is the cause of multiple diseases in developing countries. Staple crop biofortification is an efficient means to combat such deficiencies in the diets of local consumers. Biofortified lines of sweet potato (Ipomoea batata L. Lam) with enhanced beta-carotene content have been developed in Ghana to alleviate Vitamin A Deficiency. These genotypes are propagated using meristem micropropagation to ensure the generation of virus-free propagules. In vitro culture exposes micropropagated plants to conditions that can lead to the accumulation of somaclonal variation with the potential to generate unwanted aberrant phenotypes. However, the effect of micropropagation induced somaclonal variation on the production of key nutrients by field-grown plants has not been previously studied. Here we assessed the extent of in vitro culture induced somaclonal variation, at a phenotypic, compositional and genetic/epigenetic level, by comparing field-maintained and micropropagated lines of three elite Ghanaian sweet potato genotypes grown in a common garden. Although micropropagated plants presented no observable morphological abnormalities compared to field maintained lines, they presented significantly lower levels of iron, total protein, zinc, and glucose. Methylation Sensitive Amplification Polymorphism analysis showed a high level of in vitro culture induced molecular variation in micropropagated plants. Epigenetic, rather than genetic variation, accounts for most of the observed molecular variability. Taken collectively, our results highlight the importance of ensuring the clonal fidelity of the micropropagated biofortified lines in order to reduce potential losses in the nutritional value prior to their commercial release.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted November 15, 2018.
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Common garden experiment reveals altered nutritional values and DNA methylation profiles in micropropagated three elite Ghanaian sweet potato genotypes
Belinda Akomeah, Marian D. Quain, Sunita A. Ramesh, Carlos M. Rodríguez López
bioRxiv 471623; doi: https://doi.org/10.1101/471623
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Common garden experiment reveals altered nutritional values and DNA methylation profiles in micropropagated three elite Ghanaian sweet potato genotypes
Belinda Akomeah, Marian D. Quain, Sunita A. Ramesh, Carlos M. Rodríguez López
bioRxiv 471623; doi: https://doi.org/10.1101/471623

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