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Viral characteristics associated with sustenance of elite neutralizing activity in chronically HIV-1C infected monozygotic pediatric twins

Nitesh Mishra, Muzamil Ashraf Makhdoomi, Shaifali Sharma, Sanjeev Kumar, Deep-shika Kumar, Himanshi Chawla, Ravinder Singh, Uma Kanga, Bimal Kumar Das, Rakesh Lodha, Sushil K Kabra, Kalpana Luthra.
doi: https://doi.org/10.1101/475822
Nitesh Mishra
1Department of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
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Muzamil Ashraf Makhdoomi
1Department of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
2Department of Biochemistry, Government College for Women, Cluster University Srinagar, Srinagar, India.
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Shaifali Sharma
1Department of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
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Sanjeev Kumar
1Department of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
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Deep-shika Kumar
1Department of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
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Himanshi Chawla
1Department of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
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Ravinder Singh
3Department of Microbiology, All India Institute of Medical Sciences, New Delhi, India.
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Uma Kanga
4Department of Transplant Immunology and Immunogenetics, All India Institute of Medical Sciences, New Delhi, India.
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Bimal Kumar Das
3Department of Microbiology, All India Institute of Medical Sciences, New Delhi, India.
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Rakesh Lodha
5Department of Pediatrics, All India Institute of Medical Sciences, New Delhi, India.
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Sushil K Kabra
5Department of Pediatrics, All India Institute of Medical Sciences, New Delhi, India.
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Kalpana Luthra.
1Department of Biochemistry, All India Institute of Medical Sciences, New Delhi, India.
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Abstract

Broad and potent neutralizing antibodies (bnAbs) with multiple epitope specificities evolve in HIV-1 infected children. Herein we studied two antiretroviral naïve chronically HIV-1C in-fected monozygotic pediatric twins AIIMS_329 and AIIMS_330 with potent plasma bnAbs. Elite plasma neutralizing activity was observed since initial sampling at 78 months in AIIMS_330 and persisted throughout, while in AIIMS_329 it was seen at 90-months of age after which potency decreased overtime. We evaluated potential viral characteristics associated with the varied immune profile by generating single genome amplified pseudoviruses. The AIIMS_329 viruses generated from 90-month time point sampling were neutralization sensitive to second generation bnAbs and contemporaneous autologous plasma antibodies, while viruses from 112-months and 117-month timepoints were resistant to most bnAbs and autologous contemporaneous plasma. AIIMS_329 viruses developed resistance to plasma nAbs plausibly by N160-glycan loss, V1- and V4-loop lengthening. The viruses generated from AIIMS_330 at 90-month and 117-month timepoint showed varied susceptibility to bnAbs and autologous contemporaneous plasma antibodies while the viruses of 112-month timepoint, at which plasma nAb specificities mapped to the V2-glycan, V3-glycan and CD4bs, were resistant to autologous contemporaneous plasma antibodies as well as most bnAbs. We observed evolution of a viral pool in AIIMS_330 donor, comprising of plasma antibody neutralization sensitive or resistant diverse autologous viruses that in turn may have contributed to development and maintenance of elite neutralizing activity. The findings of this study provide information towards understanding factors involved in generation and maintenance of potent plasma nAbs.

Importance Chronically HIV-1 infected children that develop elite neutralizing activity are suitable candidates to understand the mechanisms that lead to the co-evolution of virus and antibody response. Here, we evaluated the alterations in virus and antibody responses over time in chronically HIV-1C infected monozygotic pediatric twins, AIIMS_329 and AIIMS_330, who had acquired the infection by vertical transmission. AIIMS_330 retained the elite plasma neutralizing activity throughout, while in AIIMS_329, the potency decreased post 90 months of age. The corresponding viral pool from post 90-month samples in AIIMS_330 showed varied susceptibility, while that in AIIMS_329, developed resistance to bnAbs and autologous plasma antibodies. The findings of this study, conducted in twin children of same genetic make-up and infected at birth with a single source of HIV-1C, suggest that a viral pool with varied susceptibility to antibodies could have been one of the factors responsible for sustained elite neutralizing activity in AIIMS_330.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted November 23, 2018.
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Viral characteristics associated with sustenance of elite neutralizing activity in chronically HIV-1C infected monozygotic pediatric twins
Nitesh Mishra, Muzamil Ashraf Makhdoomi, Shaifali Sharma, Sanjeev Kumar, Deep-shika Kumar, Himanshi Chawla, Ravinder Singh, Uma Kanga, Bimal Kumar Das, Rakesh Lodha, Sushil K Kabra, Kalpana Luthra.
bioRxiv 475822; doi: https://doi.org/10.1101/475822
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Viral characteristics associated with sustenance of elite neutralizing activity in chronically HIV-1C infected monozygotic pediatric twins
Nitesh Mishra, Muzamil Ashraf Makhdoomi, Shaifali Sharma, Sanjeev Kumar, Deep-shika Kumar, Himanshi Chawla, Ravinder Singh, Uma Kanga, Bimal Kumar Das, Rakesh Lodha, Sushil K Kabra, Kalpana Luthra.
bioRxiv 475822; doi: https://doi.org/10.1101/475822

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