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OCHROdb: a comprehensive, quality checked database of open chromatin regions from sequencing data

Parisa Shooshtari, Samantha Feng, Viswateja Nelakuditi, Justin Foong, Michael Brudno, Chris Cotsapas
doi: https://doi.org/10.1101/484840
Parisa Shooshtari
1Center for Computational Medicine, Peter Gilgan Centre for Research and Learning, Hospital for Sick Children (SickKids), Toronto, ON, M5G 0A4, Canada
2Genetics and Genome Biology Program, Hospital for Sick Children (SickKids), Toronto, ON, M5G 0A4, Canada
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  • For correspondence: parisa.shooshtari@sickkids.ca brudno@cs.toronto.edu cotsapas@broadinstitute.org
Samantha Feng
1Center for Computational Medicine, Peter Gilgan Centre for Research and Learning, Hospital for Sick Children (SickKids), Toronto, ON, M5G 0A4, Canada
3Biomedical Engineering, University of Waterloo, Waterloo, ON, N2I 3G1, Canada
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Viswateja Nelakuditi
1Center for Computational Medicine, Peter Gilgan Centre for Research and Learning, Hospital for Sick Children (SickKids), Toronto, ON, M5G 0A4, Canada
2Genetics and Genome Biology Program, Hospital for Sick Children (SickKids), Toronto, ON, M5G 0A4, Canada
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Justin Foong
1Center for Computational Medicine, Peter Gilgan Centre for Research and Learning, Hospital for Sick Children (SickKids), Toronto, ON, M5G 0A4, Canada
2Genetics and Genome Biology Program, Hospital for Sick Children (SickKids), Toronto, ON, M5G 0A4, Canada
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Michael Brudno
1Center for Computational Medicine, Peter Gilgan Centre for Research and Learning, Hospital for Sick Children (SickKids), Toronto, ON, M5G 0A4, Canada
2Genetics and Genome Biology Program, Hospital for Sick Children (SickKids), Toronto, ON, M5G 0A4, Canada
4Department of Computer Science, University of Toronto, Toronto, ON, M5T 3A1, Canada
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  • For correspondence: parisa.shooshtari@sickkids.ca brudno@cs.toronto.edu cotsapas@broadinstitute.org
Chris Cotsapas
5Department of Neurology, Yale University, New Haven, CT, 06510, USA
6Medical and Population Genetics and Stanley Center for Psychiatric Research, Broad Institute, Cambridge, MA, 02142, USA
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  • For correspondence: parisa.shooshtari@sickkids.ca brudno@cs.toronto.edu cotsapas@broadinstitute.org
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Article Information

doi 
https://doi.org/10.1101/484840
History 
  • December 3, 2018.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.

Author Information

  1. Parisa Shooshtari1,2,*,
  2. Samantha Feng1,3,
  3. Viswateja Nelakuditi1,2,
  4. Justin Foong1,2,
  5. Michael Brudno1,2,4,* and
  6. Chris Cotsapas5,6,*
  1. 1Center for Computational Medicine, Peter Gilgan Centre for Research and Learning, Hospital for Sick Children (SickKids), Toronto, ON, M5G 0A4, Canada
  2. 2Genetics and Genome Biology Program, Hospital for Sick Children (SickKids), Toronto, ON, M5G 0A4, Canada
  3. 3Biomedical Engineering, University of Waterloo, Waterloo, ON, N2I 3G1, Canada
  4. 4Department of Computer Science, University of Toronto, Toronto, ON, M5T 3A1, Canada
  5. 5Department of Neurology, Yale University, New Haven, CT, 06510, USA
  6. 6Medical and Population Genetics and Stanley Center for Psychiatric Research, Broad Institute, Cambridge, MA, 02142, USA
  1. ↵*To whom correspondence should be addressed. Email: parisa.shooshtari{at}sickkids.ca, brudno{at}cs.toronto.edu, cotsapas{at}broadinstitute.org
  • Present Address: Parisa Shooshtari, Center for Computational Medicine, Peter Gilgan Centre for Research and Learning, Hospital for Sick Children (SickKids), 686 Bay Street, Toronto, ON, M5G 0A4, Canada

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Posted December 03, 2018.
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OCHROdb: a comprehensive, quality checked database of open chromatin regions from sequencing data
Parisa Shooshtari, Samantha Feng, Viswateja Nelakuditi, Justin Foong, Michael Brudno, Chris Cotsapas
bioRxiv 484840; doi: https://doi.org/10.1101/484840
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OCHROdb: a comprehensive, quality checked database of open chromatin regions from sequencing data
Parisa Shooshtari, Samantha Feng, Viswateja Nelakuditi, Justin Foong, Michael Brudno, Chris Cotsapas
bioRxiv 484840; doi: https://doi.org/10.1101/484840

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