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GA-repeats on mammalian X chromosomes support Ohno’s hypothesis of dosage compensation by transcriptional upregulation

View ORCID ProfileEdridge D’Souza, Kathryn Weinand, Elizaveta Hosage, Steve Gisselbrecht, Vicky Markstein, Peter Markstein, Martha L. Bulyk, View ORCID ProfileMichele Markstein
doi: https://doi.org/10.1101/485300
Edridge D’Souza
1Biology Department, University of Massachusetts Amherst, 611 North Pleasant Street, Amherst MA 01003
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  • ORCID record for Edridge D’Souza
Kathryn Weinand
2Division of Genetics, Department of Medicine; Brigham and Women’s Hospital and Harvard Medical School, Boston, MA 02115
3Bioinformatics and Integrative Genomics Graduate Program, Harvard Medical School, Boston, MA 02115
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Elizaveta Hosage
1Biology Department, University of Massachusetts Amherst, 611 North Pleasant Street, Amherst MA 01003
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Steve Gisselbrecht
2Division of Genetics, Department of Medicine; Brigham and Women’s Hospital and Harvard Medical School, Boston, MA 02115
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Vicky Markstein
4in silico Labs, 160 Redland Road, Woodside, CA 94062
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Peter Markstein
4in silico Labs, 160 Redland Road, Woodside, CA 94062
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Martha L. Bulyk
2Division of Genetics, Department of Medicine; Brigham and Women’s Hospital and Harvard Medical School, Boston, MA 02115
3Bioinformatics and Integrative Genomics Graduate Program, Harvard Medical School, Boston, MA 02115
5Department of Pathology; Brigham and Women’s Hospital and Harvard Medical School, Boston, MA 02115
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Michele Markstein
1Biology Department, University of Massachusetts Amherst, 611 North Pleasant Street, Amherst MA 01003
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  • ORCID record for Michele Markstein
  • For correspondence: mmarkstein@bio.umass.edu
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ABSTRACT

Over 50 years ago, Susumo Ohno proposed that dosage compensation in mammals would require upregulation of gene expression on the single active X chromosome, a mechanism which to date is best understood in the fruit fly Drosophila melanogaster. Here, we report that the GA-repeat sequences that recruit the conserved MSL dosage compensation complex to the Drosophila X chromosome are also enriched across mammalian X chromosomes, providing genomic support for the Ohno hypothesis. We show that mammalian GA-repeats derive in part from transposable elements, suggesting a mechanism whereby unrelated X chromosomes from dipterans to mammals accumulate binding sites for the MSL dosage compensation complex through convergent evolution, driven by their propensity to accumulate transposable elements.

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Posted April 02, 2019.
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GA-repeats on mammalian X chromosomes support Ohno’s hypothesis of dosage compensation by transcriptional upregulation
Edridge D’Souza, Kathryn Weinand, Elizaveta Hosage, Steve Gisselbrecht, Vicky Markstein, Peter Markstein, Martha L. Bulyk, Michele Markstein
bioRxiv 485300; doi: https://doi.org/10.1101/485300
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GA-repeats on mammalian X chromosomes support Ohno’s hypothesis of dosage compensation by transcriptional upregulation
Edridge D’Souza, Kathryn Weinand, Elizaveta Hosage, Steve Gisselbrecht, Vicky Markstein, Peter Markstein, Martha L. Bulyk, Michele Markstein
bioRxiv 485300; doi: https://doi.org/10.1101/485300

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