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Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation
View ORCID ProfileDerek M. Bickhart, Mick Watson, Sergey Koren, Kevin Panke-Buisse, Laura M. Cersosimo, Maximilian O. Press, Curtis P. Van Tassell, Jo Ann S. Van Kessel, Bradd J. Haley, Seon Woo Kim, Cheryl Heiner, Garret Suen, Kiranmayee Bakshy, Ivan Liachko, Shawn T. Sullivan, Jay Ghurye, Mihai Pop, Paul J. Weimer, Adam M. Phillippy, Timothy P.L. Smith
doi: https://doi.org/10.1101/491175
Derek M. Bickhart
1Cell Wall Biology and Utilization Laboratory, Dairy Forage Research Center, USDA, Madison, WI, 53706, USA
Mick Watson
2Division of Genetics and Genomics, The Roslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, EH25 9RG, UK
Sergey Koren
3Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, Maryland, USA
Kevin Panke-Buisse
1Cell Wall Biology and Utilization Laboratory, Dairy Forage Research Center, USDA, Madison, WI, 53706, USA
Laura M. Cersosimo
4Department of Animal Sciences, University of Florida, Gainesville, FL, 32611, USA
Maximilian O. Press
5Phase Genomics Inc., Seattle, WA 98109, USA
Curtis P. Van Tassell
6Animal Genomics and Improvement Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, USDA, Beltsville, MD 20705 USA
Jo Ann S. Van Kessel
7Environmental Microbial and Food Safety Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, USDA, Beltsville, MD 20705 USA
Bradd J. Haley
7Environmental Microbial and Food Safety Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, USDA, Beltsville, MD 20705 USA
Seon Woo Kim
7Environmental Microbial and Food Safety Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, USDA, Beltsville, MD 20705 USA
Cheryl Heiner
8Pacific Biosciences, Menlo Park, CA, USA
Garret Suen
9Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, 53706, USA
Kiranmayee Bakshy
1Cell Wall Biology and Utilization Laboratory, Dairy Forage Research Center, USDA, Madison, WI, 53706, USA
Ivan Liachko
5Phase Genomics Inc., Seattle, WA 98109, USA
Shawn T. Sullivan
5Phase Genomics Inc., Seattle, WA 98109, USA
Jay Ghurye
10Department of Computer Science, University of Maryland, College Park, MD, 20742, USA
Mihai Pop
10Department of Computer Science, University of Maryland, College Park, MD, 20742, USA
Paul J. Weimer
1Cell Wall Biology and Utilization Laboratory, Dairy Forage Research Center, USDA, Madison, WI, 53706, USA
9Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, 53706, USA
Adam M. Phillippy
3Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, Maryland, USA
Timothy P.L. Smith
11USDA-ARS U.S. Meat Animal Research Center, Clay Center, NE, 68933, USA
Article usage
Posted December 09, 2018.
Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation
Derek M. Bickhart, Mick Watson, Sergey Koren, Kevin Panke-Buisse, Laura M. Cersosimo, Maximilian O. Press, Curtis P. Van Tassell, Jo Ann S. Van Kessel, Bradd J. Haley, Seon Woo Kim, Cheryl Heiner, Garret Suen, Kiranmayee Bakshy, Ivan Liachko, Shawn T. Sullivan, Jay Ghurye, Mihai Pop, Paul J. Weimer, Adam M. Phillippy, Timothy P.L. Smith
bioRxiv 491175; doi: https://doi.org/10.1101/491175
Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation
Derek M. Bickhart, Mick Watson, Sergey Koren, Kevin Panke-Buisse, Laura M. Cersosimo, Maximilian O. Press, Curtis P. Van Tassell, Jo Ann S. Van Kessel, Bradd J. Haley, Seon Woo Kim, Cheryl Heiner, Garret Suen, Kiranmayee Bakshy, Ivan Liachko, Shawn T. Sullivan, Jay Ghurye, Mihai Pop, Paul J. Weimer, Adam M. Phillippy, Timothy P.L. Smith
bioRxiv 491175; doi: https://doi.org/10.1101/491175
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