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iTALK: an R Package to Characterize and Illustrate Intercellular Communication

Yuanxin Wang, Ruiping Wang, Shaojun Zhang, Shumei Song, Changying Jiang, Guangchun Han, Michael Wang, Jaffer Ajani, Andy Futreal, Linghua Wang
doi: https://doi.org/10.1101/507871
Yuanxin Wang
1Department of Genomic Medicine,The University of Texas MD Anderson Cancer Center, Houston, Texas, USA
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Ruiping Wang
1Department of Genomic Medicine,The University of Texas MD Anderson Cancer Center, Houston, Texas, USA
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Shaojun Zhang
1Department of Genomic Medicine,The University of Texas MD Anderson Cancer Center, Houston, Texas, USA
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Shumei Song
2Department of Gastrointestinal Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA
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Changying Jiang
3Department of Lymphoma and Myeloma, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA
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Guangchun Han
1Department of Genomic Medicine,The University of Texas MD Anderson Cancer Center, Houston, Texas, USA
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Michael Wang
3Department of Lymphoma and Myeloma, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA
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Jaffer Ajani
2Department of Gastrointestinal Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA
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Andy Futreal
1Department of Genomic Medicine,The University of Texas MD Anderson Cancer Center, Houston, Texas, USA
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Linghua Wang
1Department of Genomic Medicine,The University of Texas MD Anderson Cancer Center, Houston, Texas, USA
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  • For correspondence: [email protected]
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ABSTRACT

Crosstalk between tumor cells and other cells within the tumor microenvironment (TME) plays a crucial role in tumor progression, metastases, and therapy resistance. We present iTALK, a computational approach to characterize and illustrate intercellular communication signals in the multicellular tumor ecosystem using single-cell RNA sequencing data. iTALK can in principle be used to dissect the complexity, diversity, and dynamics of cell-cell communication from a wide range of cellular processes.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted January 04, 2019.
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iTALK: an R Package to Characterize and Illustrate Intercellular Communication
Yuanxin Wang, Ruiping Wang, Shaojun Zhang, Shumei Song, Changying Jiang, Guangchun Han, Michael Wang, Jaffer Ajani, Andy Futreal, Linghua Wang
bioRxiv 507871; doi: https://doi.org/10.1101/507871
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iTALK: an R Package to Characterize and Illustrate Intercellular Communication
Yuanxin Wang, Ruiping Wang, Shaojun Zhang, Shumei Song, Changying Jiang, Guangchun Han, Michael Wang, Jaffer Ajani, Andy Futreal, Linghua Wang
bioRxiv 507871; doi: https://doi.org/10.1101/507871

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