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Semantic Integration of Clinical Laboratory Tests from Electronic Health Records for Deep Phenotyping and Biomarker Discovery
Xingmin Aaron Zhang, Amy Yates, Nicole Vasilevsky, JP Gourdine, Leigh C. Carmody, Daniel Danis, Marcin P. Joachimiak, Vida Ravanmehr, Emily R. Pfaff, James Champion, Kimberly Robasky, Hao Xu, Karamarie Fecho, Nephi A. Walton, Richard Zhu, Justin Ramsdill, Chris Mungall, Sebastian Köhler, Melissa A. Haendel, Clem McDonald, Daniel J. Vreeman, David B. Peden, Christopher G. Chute, Peter N. Robinson
doi: https://doi.org/10.1101/519231
Xingmin Aaron Zhang
1The Jackson Laboratory for Genomic Medicine, Farmington CT 06032, USA
Amy Yates
2Oregon Clinical & Translational Research Institute, Oregon Health & Science University, Portland, OR 97239, USA
Nicole Vasilevsky
2Oregon Clinical & Translational Research Institute, Oregon Health & Science University, Portland, OR 97239, USA
3Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, OR 97239, USA
JP Gourdine
2Oregon Clinical & Translational Research Institute, Oregon Health & Science University, Portland, OR 97239, USA
4Library, Oregon Health & Science University, Portland, OR 97239, USA
Leigh C. Carmody
1The Jackson Laboratory for Genomic Medicine, Farmington CT 06032, USA
Daniel Danis
1The Jackson Laboratory for Genomic Medicine, Farmington CT 06032, USA
Marcin P. Joachimiak
5Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
Vida Ravanmehr
1The Jackson Laboratory for Genomic Medicine, Farmington CT 06032, USA
Emily R. Pfaff
6North Carolina Translational and Clinical Sciences Institute (NC TraCS), University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
James Champion
6North Carolina Translational and Clinical Sciences Institute (NC TraCS), University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
Kimberly Robasky
6North Carolina Translational and Clinical Sciences Institute (NC TraCS), University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
7Genetics Department, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
8School of Information and Library Sciences, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
Hao Xu
9Renaissance Computing Institute, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
Karamarie Fecho
6North Carolina Translational and Clinical Sciences Institute (NC TraCS), University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
Nephi A. Walton
10Genomic Medicine Institute, Geisinger Health System, Danville, PA 17822, USA
Richard Zhu
11Institute for Clinical and Translational Research, Johns Hopkins University, Baltimore, MD 21202, USA
Justin Ramsdill
2Oregon Clinical & Translational Research Institute, Oregon Health & Science University, Portland, OR 97239, USA
Chris Mungall
5Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
Sebastian Köhler
12Charité Centrum für Therapieforschung, Charité - Universitätsmedizin Berlin Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Berlin 10117, Germany
13Einstein Center Digital Future, Berlin 10117, Germany
Melissa A. Haendel
2Oregon Clinical & Translational Research Institute, Oregon Health & Science University, Portland, OR 97239, USA
3Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, OR 97239, USA
14Linus Pauling Institute and Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR 97331, USA
Clem McDonald
15Lister Hill National Center for Biomedical Communications, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
Daniel J. Vreeman
16Department of Medicine, Indiana University School of Medicine, Indianapolis, IN 46202, USA
17Center for Biomedical Informatics, Regenstrief Institute, Inc., Indianapolis, IN 46202, USA
David B. Peden
6North Carolina Translational and Clinical Sciences Institute (NC TraCS), University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
18Division of Allergy, Immunology and Rheumatology, Department of Pediatrics, University of North Carolina, Chapel Hill, NC 27599, USA
19University of North Carolina Center for Environmental Medicine, Asthma and Lung Biology, University of North Carolina, Chapel Hill, NC 27599, USA
Christopher G. Chute
11Institute for Clinical and Translational Research, Johns Hopkins University, Baltimore, MD 21202, USA
Peter N. Robinson
1The Jackson Laboratory for Genomic Medicine, Farmington CT 06032, USA
20Institute for Systems Genomics, University of Connecticut, Farmington, CT 06032, USA
Article usage
Posted January 13, 2019.
Semantic Integration of Clinical Laboratory Tests from Electronic Health Records for Deep Phenotyping and Biomarker Discovery
Xingmin Aaron Zhang, Amy Yates, Nicole Vasilevsky, JP Gourdine, Leigh C. Carmody, Daniel Danis, Marcin P. Joachimiak, Vida Ravanmehr, Emily R. Pfaff, James Champion, Kimberly Robasky, Hao Xu, Karamarie Fecho, Nephi A. Walton, Richard Zhu, Justin Ramsdill, Chris Mungall, Sebastian Köhler, Melissa A. Haendel, Clem McDonald, Daniel J. Vreeman, David B. Peden, Christopher G. Chute, Peter N. Robinson
bioRxiv 519231; doi: https://doi.org/10.1101/519231
Semantic Integration of Clinical Laboratory Tests from Electronic Health Records for Deep Phenotyping and Biomarker Discovery
Xingmin Aaron Zhang, Amy Yates, Nicole Vasilevsky, JP Gourdine, Leigh C. Carmody, Daniel Danis, Marcin P. Joachimiak, Vida Ravanmehr, Emily R. Pfaff, James Champion, Kimberly Robasky, Hao Xu, Karamarie Fecho, Nephi A. Walton, Richard Zhu, Justin Ramsdill, Chris Mungall, Sebastian Köhler, Melissa A. Haendel, Clem McDonald, Daniel J. Vreeman, David B. Peden, Christopher G. Chute, Peter N. Robinson
bioRxiv 519231; doi: https://doi.org/10.1101/519231
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