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Dominant coral bacterium Endozoicomonas acroporae metabolizes DMSP

Kshitij Tandon, Pei-Wen Chiang, Chih-Ying Lu, Shan-Hua Yang, Ya-Fan Chen, Naohisa Wada, Ping-Yun Chen, Hsiao-Yu Chang, Ming-Shean Chou, Wen-Ming Chen, Sen-Lin Tang
doi: https://doi.org/10.1101/519546
Kshitij Tandon
Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan;
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Pei-Wen Chiang
Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan;
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Chih-Ying Lu
Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan;
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Shan-Hua Yang
Department of Life Science, Tunghai University, Taichung 40704, Taiwan;
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Ya-Fan Chen
Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan;
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Naohisa Wada
Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan;
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Ping-Yun Chen
Institute of Environmental Engineering, National Sun Yat-Sen University, Kaohsiung 80424, Taiwan;
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Hsiao-Yu Chang
Institute of Environmental Engineering, National Sun Yat-Sen University, Kaohsiung 80424, Taiwan;
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Ming-Shean Chou
Institute of Environmental Engineering, National Sun Yat-Sen University, Kaohsiung 80424, Taiwan;
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Wen-Ming Chen
Department of Seafood Science, National Kaohsiung Marine University, Kaohsiung City 811, Taiwan;
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Sen-Lin Tang
Biodiversity, Research Center, Academia Sinica, Taipei 115, Taiwan
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  • For correspondence: sltang@gate.sinica.edu.tw
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Abstract

Dominant coral associated Endozoicomonas bacteria species have been long hypothesized to play a role in the global sulfur cycle by metabolizing Dimethylsulfoniopropionate (DMSP) into Dimethylsulfide (DMS), which releases sulfur into the atmosphere; however, no sequenced genome to date harbors genes for this process. We assembled high-quality (>95 % complete) genomes of two new strains (Acr-1 and Acr-5) of a recently added species Endozoicomonas acroporae isolated from the coral Acropora muricata. We identified and functionally characterized the first DMSP lyase;a dddD gene homolog found in all E. acroporae, capable of metabolizing DMSP into DMS via the DddD cleavage pathway using qPCR and GC-MS. Comparative genomic analysis identified that Endozoicomonas has high genomic divergence and a high percentage oxidative stress responsive genes and that E. acroporae strains have the highest number of Type III secretion system genes (T3SS) in the genus. This study confirms the role of the genus Endozoicomonas in the global sulfur cycle.

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Posted January 17, 2019.
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Dominant coral bacterium Endozoicomonas acroporae metabolizes DMSP
Kshitij Tandon, Pei-Wen Chiang, Chih-Ying Lu, Shan-Hua Yang, Ya-Fan Chen, Naohisa Wada, Ping-Yun Chen, Hsiao-Yu Chang, Ming-Shean Chou, Wen-Ming Chen, Sen-Lin Tang
bioRxiv 519546; doi: https://doi.org/10.1101/519546
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Dominant coral bacterium Endozoicomonas acroporae metabolizes DMSP
Kshitij Tandon, Pei-Wen Chiang, Chih-Ying Lu, Shan-Hua Yang, Ya-Fan Chen, Naohisa Wada, Ping-Yun Chen, Hsiao-Yu Chang, Ming-Shean Chou, Wen-Ming Chen, Sen-Lin Tang
bioRxiv 519546; doi: https://doi.org/10.1101/519546

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