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Probabilistic cell type assignment of single-cell transcriptomic data reveals spatiotemporal microenvironment dynamics in human cancers
Allen W Zhang, Ciara O'Flanagan, Elizabeth Chavez, Jamie LP Lim, Andrew McPherson, Matt Wiens, Pascale Walters, Tim Chan, Brittany Hewitson, Daniel Lai, Anja Mottok, Clementine Sarkozy, Lauren Chong, Tomohiro Aoki, Xuehai Wang, Andrew P Weng, Jessica N McAlpine, Samuel Aparicio, Christian Steidl, Kieran R Campbell, Sohrab P Shah
doi: https://doi.org/10.1101/521914
Allen W Zhang
1 University of British Columbia;
Ciara O'Flanagan
2 British Columbia Cancer Research Centre;
Elizabeth Chavez
2 British Columbia Cancer Research Centre;
Jamie LP Lim
2 British Columbia Cancer Research Centre;
Andrew McPherson
2 British Columbia Cancer Research Centre;
Matt Wiens
2 British Columbia Cancer Research Centre;
Pascale Walters
2 British Columbia Cancer Research Centre;
Tim Chan
2 British Columbia Cancer Research Centre;
Brittany Hewitson
2 British Columbia Cancer Research Centre;
Daniel Lai
2 British Columbia Cancer Research Centre;
Anja Mottok
3 Ulm University Medical Centre;
Clementine Sarkozy
2 British Columbia Cancer Research Centre;
Lauren Chong
2 British Columbia Cancer Research Centre;
Tomohiro Aoki
2 British Columbia Cancer Research Centre;
Xuehai Wang
2 British Columbia Cancer Research Centre;
Andrew P Weng
2 British Columbia Cancer Research Centre;
Jessica N McAlpine
2 British Columbia Cancer Research Centre;
Samuel Aparicio
2 British Columbia Cancer Research Centre;
Christian Steidl
2 British Columbia Cancer Research Centre;
Kieran R Campbell
1 University of British Columbia;
Sohrab P Shah
4 Memorial Sloan Kettering Cancer Center
Article usage
Posted January 16, 2019.
Probabilistic cell type assignment of single-cell transcriptomic data reveals spatiotemporal microenvironment dynamics in human cancers
Allen W Zhang, Ciara O'Flanagan, Elizabeth Chavez, Jamie LP Lim, Andrew McPherson, Matt Wiens, Pascale Walters, Tim Chan, Brittany Hewitson, Daniel Lai, Anja Mottok, Clementine Sarkozy, Lauren Chong, Tomohiro Aoki, Xuehai Wang, Andrew P Weng, Jessica N McAlpine, Samuel Aparicio, Christian Steidl, Kieran R Campbell, Sohrab P Shah
bioRxiv 521914; doi: https://doi.org/10.1101/521914
Probabilistic cell type assignment of single-cell transcriptomic data reveals spatiotemporal microenvironment dynamics in human cancers
Allen W Zhang, Ciara O'Flanagan, Elizabeth Chavez, Jamie LP Lim, Andrew McPherson, Matt Wiens, Pascale Walters, Tim Chan, Brittany Hewitson, Daniel Lai, Anja Mottok, Clementine Sarkozy, Lauren Chong, Tomohiro Aoki, Xuehai Wang, Andrew P Weng, Jessica N McAlpine, Samuel Aparicio, Christian Steidl, Kieran R Campbell, Sohrab P Shah
bioRxiv 521914; doi: https://doi.org/10.1101/521914
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