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Complete genome screening of clinical MRSA isolates identifies lineage diversity and provides full resolution of transmission and outbreak events
Mitchell J Sullivan, Deena R Altman, Kieran I Chacko, Brianne Ciferri, Elizabeth Webster, Theodore R. Pak, Gintaras Deikus, Martha Lewis-Sandari, Zenab Khan, Colleen Beckford, Angela Rendo, Flora Samaroo, Robert Sebra, Ramona Karam-Howlin, Tanis Dingle, Camille Hamula, Ali Bashir, Eric Schadt, Gopi Patel, Frances Wallach, Andrew Kasarskis, Kathleen Gibbs, View ORCID ProfileHarm van Bakel
doi: https://doi.org/10.1101/522078
Mitchell J Sullivan
1Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
2Icahn Institute for Data Science and Genomic Technology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Deena R Altman
1Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
3Department of Medicine, Division of Infectious Diseases, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Kieran I Chacko
1Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
2Icahn Institute for Data Science and Genomic Technology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Brianne Ciferri
1Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
2Icahn Institute for Data Science and Genomic Technology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Elizabeth Webster
1Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
2Icahn Institute for Data Science and Genomic Technology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Theodore R. Pak
1Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
2Icahn Institute for Data Science and Genomic Technology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Gintaras Deikus
1Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
2Icahn Institute for Data Science and Genomic Technology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Martha Lewis-Sandari
1Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
2Icahn Institute for Data Science and Genomic Technology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Zenab Khan
1Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
2Icahn Institute for Data Science and Genomic Technology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Colleen Beckford
1Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
2Icahn Institute for Data Science and Genomic Technology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Angela Rendo
4Department of Pathology, Clinical Microbiology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Flora Samaroo
4Department of Pathology, Clinical Microbiology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Robert Sebra
1Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
2Icahn Institute for Data Science and Genomic Technology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Ramona Karam-Howlin
3Department of Medicine, Division of Infectious Diseases, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Tanis Dingle
4Department of Pathology, Clinical Microbiology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Camille Hamula
4Department of Pathology, Clinical Microbiology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Ali Bashir
1Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
2Icahn Institute for Data Science and Genomic Technology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Eric Schadt
1Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
2Icahn Institute for Data Science and Genomic Technology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Gopi Patel
3Department of Medicine, Division of Infectious Diseases, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Frances Wallach
5Department of Medicine, Division of Infectious Diseases, Northwell Long Island Jewish, New York
Andrew Kasarskis
1Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
2Icahn Institute for Data Science and Genomic Technology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Kathleen Gibbs
6Division of Neonatology and Department of Pediatrics, The Children’s Hospital of Philadelphia and The University of Pennsylvania, Philadelphia, PA
Harm van Bakel
1Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
2Icahn Institute for Data Science and Genomic Technology, Icahn School of Medicine at Mount Sinai, New York City, NY, USA
Article usage
Posted May 21, 2019.
Complete genome screening of clinical MRSA isolates identifies lineage diversity and provides full resolution of transmission and outbreak events
Mitchell J Sullivan, Deena R Altman, Kieran I Chacko, Brianne Ciferri, Elizabeth Webster, Theodore R. Pak, Gintaras Deikus, Martha Lewis-Sandari, Zenab Khan, Colleen Beckford, Angela Rendo, Flora Samaroo, Robert Sebra, Ramona Karam-Howlin, Tanis Dingle, Camille Hamula, Ali Bashir, Eric Schadt, Gopi Patel, Frances Wallach, Andrew Kasarskis, Kathleen Gibbs, Harm van Bakel
bioRxiv 522078; doi: https://doi.org/10.1101/522078
Complete genome screening of clinical MRSA isolates identifies lineage diversity and provides full resolution of transmission and outbreak events
Mitchell J Sullivan, Deena R Altman, Kieran I Chacko, Brianne Ciferri, Elizabeth Webster, Theodore R. Pak, Gintaras Deikus, Martha Lewis-Sandari, Zenab Khan, Colleen Beckford, Angela Rendo, Flora Samaroo, Robert Sebra, Ramona Karam-Howlin, Tanis Dingle, Camille Hamula, Ali Bashir, Eric Schadt, Gopi Patel, Frances Wallach, Andrew Kasarskis, Kathleen Gibbs, Harm van Bakel
bioRxiv 522078; doi: https://doi.org/10.1101/522078
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