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Automated acquisition of knowledge beyond pathologists

Yoichiro Yamamoto, Toyonori Tsuzuki, Jun Akatsuka, Masao Ueki, Hiromu Morikawa, Yasushi Numata, Taishi Takahara, Takuji Tsuyuki, Akira Shimizu, Ichiro Maeda, Shinichi Tsuchiya, Hiroyuki Kanno, Yukihiro Kondo, Manabu Fukumoto, Gen Tamiya, Naonori Ueda, Go Kimura
doi: https://doi.org/10.1101/539791
Yoichiro Yamamoto
Pathology Informatics Team, RIKEN Center for Advanced Intelligence Project;
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  • For correspondence: yoichiro.yamamoto@riken.jp
Toyonori Tsuzuki
Department of Surgical Pathology, Aichi Medical University Hospital;
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Jun Akatsuka
Department of Urology, Nippon Medical School Hospital;
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Masao Ueki
Statistical Genetics Team, RIKEN Center for Advanced Intelligence Project;
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Hiromu Morikawa
Pathology Informatics Team, RIKEN Center for Advanced Intelligence Project;
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Yasushi Numata
Pathology Informatics Team, RIKEN Center for Advanced Intelligence Project;
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Taishi Takahara
Department of Surgical Pathology, Aichi Medical University Hospital;
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Takuji Tsuyuki
Department of Surgical Pathology, Aichi Medical University Hospital;
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Akira Shimizu
Department of Analytic Human Pathology, Nippon Medical School;
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Ichiro Maeda
Department of Pathology, St. Marianna University School of Medicine;
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Shinichi Tsuchiya
Diagnostic Pathology, Ritsuzankai Iida Hospital;
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Hiroyuki Kanno
Department of Pathology, Shinshu University School of Medicine;
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Yukihiro Kondo
Department of Urology, Nippon Medical School Hospital;
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Manabu Fukumoto
Department of Functional Brain Imaging, Institute of Development, Aging & Cancer, Tohoku University;
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Gen Tamiya
Tohoku Medical Megabank Organization, Tohoku University;
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Naonori Ueda
Goal-Oriented Technology Research Group, RIKEN Center for Advanced Intelligence Project
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Go Kimura
Department of Urology, Nippon Medical School Hospital;
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  • For correspondence: gokimura@nms.ac.jp
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Abstract

Deep learning algorithms have been successfully used in medical image classification and cancer detection. In the next stage, the technology of acquiring explainable knowledge from medical images is highly desired. Herein, fully automated acquisition of explainable features from annotation-free histopathological images is achieved via revealing statistical distortions in datasets by introducing the way of pathologists' examination into a set of deep neural networks. As validation, we compared the prediction accuracy of prostate cancer recurrence using our algorithm-generated features with that of diagnosis by an expert pathologist using established criteria on 13,188 whole-mount pathology images. Our method found not only the findings established by humans but also features that have not been recognized so far, and showed higher accuracy than human in prognostic prediction. This study provides a new field to the deep learning approach as a novel tool for discovering uncharted knowledge, leading to effective treatments and drug discovery.

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Posted February 04, 2019.
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Automated acquisition of knowledge beyond pathologists
Yoichiro Yamamoto, Toyonori Tsuzuki, Jun Akatsuka, Masao Ueki, Hiromu Morikawa, Yasushi Numata, Taishi Takahara, Takuji Tsuyuki, Akira Shimizu, Ichiro Maeda, Shinichi Tsuchiya, Hiroyuki Kanno, Yukihiro Kondo, Manabu Fukumoto, Gen Tamiya, Naonori Ueda, Go Kimura
bioRxiv 539791; doi: https://doi.org/10.1101/539791
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Automated acquisition of knowledge beyond pathologists
Yoichiro Yamamoto, Toyonori Tsuzuki, Jun Akatsuka, Masao Ueki, Hiromu Morikawa, Yasushi Numata, Taishi Takahara, Takuji Tsuyuki, Akira Shimizu, Ichiro Maeda, Shinichi Tsuchiya, Hiroyuki Kanno, Yukihiro Kondo, Manabu Fukumoto, Gen Tamiya, Naonori Ueda, Go Kimura
bioRxiv 539791; doi: https://doi.org/10.1101/539791

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