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How Homeostasis Limits Keratinocyte Evolution

View ORCID ProfileRyan O. Schenck, Eunjung Kim, View ORCID ProfileRafael R. Bravo, View ORCID ProfileJeffrey West, View ORCID ProfileSimon Leedham, View ORCID ProfileDarryl Shibata, View ORCID ProfileAlexander R.A. Anderson
doi: https://doi.org/10.1101/548131
Ryan O. Schenck
1Integrated Mathematical Oncology Department, H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL 33612, USA
2Wellcome Centre for Human Genetics, University of Oxford, Oxford, OX37BN, UK
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  • For correspondence: ryanschenck@mail.usf.edu
Eunjung Kim
1Integrated Mathematical Oncology Department, H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL 33612, USA
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Rafael R. Bravo
1Integrated Mathematical Oncology Department, H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL 33612, USA
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Jeffrey West
1Integrated Mathematical Oncology Department, H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL 33612, USA
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Simon Leedham
2Wellcome Centre for Human Genetics, University of Oxford, Oxford, OX37BN, UK
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Darryl Shibata
3Department of Pathology, Keck School of Medicine of the University of Southern California, Los Angeles, California 90033, USA
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Alexander R.A. Anderson
1Integrated Mathematical Oncology Department, H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL 33612, USA
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Abstract

The skin is the largest human organ, functioning to serve as the protective barrier to the harsh, outside world. Recent studies have revealed that large numbers of somatic mutations accumulate, which can be used to infer normal human skin cell dynamics1-6. Here we present the first realistic mechanistic epidermal model, that uses the ‘Gattaca’ method to incorporate cell-genomes, that shows homeostasis imposes a characteristic log-linear subclone size distribution for both neutral and driver mutations, where the largest skin subclones are the oldest subclones. Because homeostasis inherently limits proliferation and therefore clonal sweeps, selection for driver mutations (NOTCH1 and TP53) in normal epidermis is instead conferred by greater persistence, which leads to larger subclone sizes. These results reveal how driver mutations may persist and expand in normal epidermis while highlighting how the integration of mechanistic modeling with genomic data provides novel insights into evolutionary cell dynamics of normal human homeostatic tissues.

Footnotes

  • ↵# Indicates the author to whom correspondence and material requests should be addressed.

  • ↵† These authors share senior authorship.

  • Supplemental Figure 1 has been integrated into Figure 1 of the manuscript. The Supplemental Information has been added to the body of the manuscript where appropriate. Introduction of the "Gattaca" method has been integrated throughout the manuscript to describe the method of integrating genomes into in silico cells.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted June 25, 2019.
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How Homeostasis Limits Keratinocyte Evolution
Ryan O. Schenck, Eunjung Kim, Rafael R. Bravo, Jeffrey West, Simon Leedham, Darryl Shibata, Alexander R.A. Anderson
bioRxiv 548131; doi: https://doi.org/10.1101/548131
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How Homeostasis Limits Keratinocyte Evolution
Ryan O. Schenck, Eunjung Kim, Rafael R. Bravo, Jeffrey West, Simon Leedham, Darryl Shibata, Alexander R.A. Anderson
bioRxiv 548131; doi: https://doi.org/10.1101/548131

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