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Drug resistance evolution in HIV in the late 1990s: hard sweeps, soft sweeps, clonal interference and the accumulation of drug resistance mutations

Kadie-Ann Williams, Pleuni Pennings
doi: https://doi.org/10.1101/548198
Kadie-Ann Williams
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1 Abstract

The goal of this paper is to provide examples of evolutionary dynamics of HIV within patients who are treated with antiretrovirals. We hope that the figures in this paper will be used in evolution and population genetics classes. We show a wide variety of patterns, specifically: soft sweeps, hard sweeps, softening sweeps and hardening sweeps, simultaneous sweeps, accumulation of mutations and clonal interference.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted February 13, 2019.
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Drug resistance evolution in HIV in the late 1990s: hard sweeps, soft sweeps, clonal interference and the accumulation of drug resistance mutations
Kadie-Ann Williams, Pleuni Pennings
bioRxiv 548198; doi: https://doi.org/10.1101/548198
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Drug resistance evolution in HIV in the late 1990s: hard sweeps, soft sweeps, clonal interference and the accumulation of drug resistance mutations
Kadie-Ann Williams, Pleuni Pennings
bioRxiv 548198; doi: https://doi.org/10.1101/548198

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