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Genomic analysis reveals shared genes and pathways in human and canine angiosarcoma

View ORCID ProfileKate Megquier, Jason Turner-Maier, Ross Swofford, Jong-Hyuk Kim, Aaron L. Sarver, Chao Wang, Sharadha Sakthikumar, Jeremy Johnson, Michele Koltookian, Mitzi Lewellen, Milcah C. Scott, Ashley J. Graef, Luke Borst, Noriko Tonomura, Jessica Alfoldi, Corrie Painter, Rachael Thomas, Elinor K. Karlsson, Matthew Breen, Jaime F. Modiano, Ingegerd Elvers, Kerstin Lindblad-Toh
doi: https://doi.org/10.1101/570879
Kate Megquier
1Broad Institute of Harvard and MIT, Cambridge, MA, USA
2Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden
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  • ORCID record for Kate Megquier
Jason Turner-Maier
1Broad Institute of Harvard and MIT, Cambridge, MA, USA
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Ross Swofford
1Broad Institute of Harvard and MIT, Cambridge, MA, USA
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Jong-Hyuk Kim
3Department of Veterinary Clinical Sciences, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, USA
4Animal Cancer Care and Research Program, University of Minnesota, St. Paul, MN, USA
5Masonic Cancer Center, University of Minnesota, Minneapolis, MN, USA
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Aaron L. Sarver
4Animal Cancer Care and Research Program, University of Minnesota, St. Paul, MN, USA
5Masonic Cancer Center, University of Minnesota, Minneapolis, MN, USA
6Institute of Health Informatics, University of Minnesota, Minneapolis, MN, USA
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Chao Wang
2Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden
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Sharadha Sakthikumar
1Broad Institute of Harvard and MIT, Cambridge, MA, USA
2Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden
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Jeremy Johnson
1Broad Institute of Harvard and MIT, Cambridge, MA, USA
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Michele Koltookian
1Broad Institute of Harvard and MIT, Cambridge, MA, USA
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Mitzi Lewellen
3Department of Veterinary Clinical Sciences, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, USA
4Animal Cancer Care and Research Program, University of Minnesota, St. Paul, MN, USA
5Masonic Cancer Center, University of Minnesota, Minneapolis, MN, USA
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Milcah C. Scott
3Department of Veterinary Clinical Sciences, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, USA
4Animal Cancer Care and Research Program, University of Minnesota, St. Paul, MN, USA
5Masonic Cancer Center, University of Minnesota, Minneapolis, MN, USA
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Ashley J. Graef
3Department of Veterinary Clinical Sciences, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, USA
4Animal Cancer Care and Research Program, University of Minnesota, St. Paul, MN, USA
5Masonic Cancer Center, University of Minnesota, Minneapolis, MN, USA
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Luke Borst
7Dept of Clinical Sciences, North Carolina State College of Veterinary Medicine, Raleight, NC, USA
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Noriko Tonomura
1Broad Institute of Harvard and MIT, Cambridge, MA, USA
8Tufts Cummings School of Veterinary Medicine, North Grafton, MA, USA
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Jessica Alfoldi
1Broad Institute of Harvard and MIT, Cambridge, MA, USA
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Corrie Painter
1Broad Institute of Harvard and MIT, Cambridge, MA, USA
9Count Me In, Cambridge, MA, USA
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Rachael Thomas
10Department of Molecular Biomedical Sciences, North Carolina State University College of Veterinary Medicine, and Comparative Medicine Institute, Raleigh, NC, USA
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Elinor K. Karlsson
1Broad Institute of Harvard and MIT, Cambridge, MA, USA
11University of Massachusetts Medical School, Worcester, MA, USA
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Matthew Breen
10Department of Molecular Biomedical Sciences, North Carolina State University College of Veterinary Medicine, and Comparative Medicine Institute, Raleigh, NC, USA
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Jaime F. Modiano
3Department of Veterinary Clinical Sciences, College of Veterinary Medicine, University of Minnesota, St. Paul, MN, USA
4Animal Cancer Care and Research Program, University of Minnesota, St. Paul, MN, USA
5Masonic Cancer Center, University of Minnesota, Minneapolis, MN, USA
12Center for Immunology, University of Minnesota, Minneapolis, MN, USA
13Stem Cell Institute, University of Minnesota, Minneapolis, MN, USA
14Institute for Engineering in Medicine, University of Minnesota, Minneapolis, MN, USA
15Department of Laboratory Medicine and Pathology, School of Medicine, University of Minnesota, Minneapolis, MN, USA
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Ingegerd Elvers
1Broad Institute of Harvard and MIT, Cambridge, MA, USA
2Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden
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Kerstin Lindblad-Toh
1Broad Institute of Harvard and MIT, Cambridge, MA, USA
2Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden
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Abstract

Angiosarcoma is a highly aggressive cancer of blood vessel-forming cells with high fatality and few effective treatment options. It is both rare and heterogenous, making large, well powered genomic studies nearly impossible. In dogs, angiosarcoma is common, with breeds like the golden retriever carrying heritable genetic factors that put them at very high risk. If the clinical similarity of canine and human angiosarcoma reflects shared genomic etiology, dogs could be a critically needed model for advancing angiosarcoma research. We assessed the genomic landscape of canine angiosarcoma via whole exome sequencing (47 golden retriever angiosarcomas) and RNA sequencing (74 angiosarcomas from multiple breeds). The predominant mutational signature was the age-associated deamination of cytosine to thymine, and somatic coding mutations occurred most frequently in the tumor suppressor TP53 (59.6% of cases) as well as two genes in the PI3K pathway: the oncogene PIK3CA (29.8%) and its regulatory subunit PIK3R1 (8.5%). We compared the canine data to human data recently released by The Angiosarcoma Project, and found the same genes and many of the same pathways significantly enriched for somatic mutations, most notably protein kinases, glycoproteins, fibronectin Type III domains, EGF-like domains, and cell adhesion proteins such as cadherins. As in human angiosarcoma, CDKN2A/B was recurrently deleted and VEGFA, KDR, and KIT recurrently gained. Canine angiosarcoma closely models human angiosarcoma on a genomic level, and is a powerful tool for investigating the pathogenesis of this devastating disease.

Footnotes

  • Conflict of interest statement: The authors declare no potential conflicts of interest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted March 08, 2019.
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Genomic analysis reveals shared genes and pathways in human and canine angiosarcoma
Kate Megquier, Jason Turner-Maier, Ross Swofford, Jong-Hyuk Kim, Aaron L. Sarver, Chao Wang, Sharadha Sakthikumar, Jeremy Johnson, Michele Koltookian, Mitzi Lewellen, Milcah C. Scott, Ashley J. Graef, Luke Borst, Noriko Tonomura, Jessica Alfoldi, Corrie Painter, Rachael Thomas, Elinor K. Karlsson, Matthew Breen, Jaime F. Modiano, Ingegerd Elvers, Kerstin Lindblad-Toh
bioRxiv 570879; doi: https://doi.org/10.1101/570879
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Genomic analysis reveals shared genes and pathways in human and canine angiosarcoma
Kate Megquier, Jason Turner-Maier, Ross Swofford, Jong-Hyuk Kim, Aaron L. Sarver, Chao Wang, Sharadha Sakthikumar, Jeremy Johnson, Michele Koltookian, Mitzi Lewellen, Milcah C. Scott, Ashley J. Graef, Luke Borst, Noriko Tonomura, Jessica Alfoldi, Corrie Painter, Rachael Thomas, Elinor K. Karlsson, Matthew Breen, Jaime F. Modiano, Ingegerd Elvers, Kerstin Lindblad-Toh
bioRxiv 570879; doi: https://doi.org/10.1101/570879

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