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A likelihood method for estimating present-day human contamination in ancient DNA samples using low-depth haploid chromosome data

View ORCID ProfileJ. Víctor Moreno-Mayar, Thorfinn Sand Korneliussen, View ORCID ProfileAnders Albrechtsen, Jyoti Dalal, Gabriel Renaud, Rasmus Nielsen, Anna-Sapfo Malaspinas
doi: https://doi.org/10.1101/594481
J. Víctor Moreno-Mayar
1Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland
2Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland
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  • ORCID record for J. Víctor Moreno-Mayar
  • For correspondence: morenomayar@gmail.com annasapfo.malaspinas@unil.ch
Thorfinn Sand Korneliussen
3Centre for Geogenetics, University of Copenhagen, 1350 Copenhagen, Denmark
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Anders Albrechtsen
4The Bioinformatics Centre, Department of Biology, University of Copenhagen, 2200 Copenhagen, Denmark
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  • ORCID record for Anders Albrechtsen
Jyoti Dalal
1Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland
2Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland
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Gabriel Renaud
3Centre for Geogenetics, University of Copenhagen, 1350 Copenhagen, Denmark
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Rasmus Nielsen
5Department of Statistics, University of California, Berkeley, CA 94720, USA
6Department of Integrative Biology, University of California, Berkeley, CA 94720, USA
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Anna-Sapfo Malaspinas
1Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland
2Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland
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  • For correspondence: morenomayar@gmail.com annasapfo.malaspinas@unil.ch
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Article Information

doi 
https://doi.org/10.1101/594481
History 
  • May 19, 2019.

Article Versions

  • Version 1 (March 31, 2019 - 18:37).
  • You are viewing Version 2, the most recent version of this article.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.

Author Information

  1. J. Víctor Moreno-Mayar1,2,*,‡,
  2. Thorfinn Sand Korneliussen3,*,
  3. Anders Albrechtsen4,
  4. Jyoti Dalal1,2,
  5. Gabriel Renaud3,
  6. Rasmus Nielsen5,6 and
  7. Anna-Sapfo Malaspinas1,2,‡
  1. 1Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland
  2. 2Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland
  3. 3Centre for Geogenetics, University of Copenhagen, 1350 Copenhagen, Denmark
  4. 4The Bioinformatics Centre, Department of Biology, University of Copenhagen, 2200 Copenhagen, Denmark
  5. 5Department of Statistics, University of California, Berkeley, CA 94720, USA
  6. 6Department of Integrative Biology, University of California, Berkeley, CA 94720, USA
  1. ↵‡To whom correspondence should be addressed. morenomayar{at}gmail.com, annasapfo.malaspinas{at}unil.ch.
  1. ↵* These authors contributed equally to this work.

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Posted May 19, 2019.
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A likelihood method for estimating present-day human contamination in ancient DNA samples using low-depth haploid chromosome data
J. Víctor Moreno-Mayar, Thorfinn Sand Korneliussen, Anders Albrechtsen, Jyoti Dalal, Gabriel Renaud, Rasmus Nielsen, Anna-Sapfo Malaspinas
bioRxiv 594481; doi: https://doi.org/10.1101/594481
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A likelihood method for estimating present-day human contamination in ancient DNA samples using low-depth haploid chromosome data
J. Víctor Moreno-Mayar, Thorfinn Sand Korneliussen, Anders Albrechtsen, Jyoti Dalal, Gabriel Renaud, Rasmus Nielsen, Anna-Sapfo Malaspinas
bioRxiv 594481; doi: https://doi.org/10.1101/594481

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