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A validated strategy to infer protein biomarkers from RNA-Seq by combining multiple mRNA splice variants and time-delay
Rasmus Magnusson, Olof Rundquist, Min Jung Kim, Sandra Hellberg, Chan Hyun Na, Mikael Benson, David Gomez-Cabrero, Ingrid Kockum, Jesper Tegnér, Fredrik Piehl, Maja Jagodic, Johan Mellergård, Claudio Altafini, Jan Ernerudh, Maria C. Jenmalm, Colm E. Nestor, Min-Sik Kim, Mika Gustafsson
doi: https://doi.org/10.1101/599373
Rasmus Magnusson
1Bioinformatics, Department of Physics, Chemistry and Biology, Linköping University, Linköping, Sweden
Olof Rundquist
1Bioinformatics, Department of Physics, Chemistry and Biology, Linköping University, Linköping, Sweden
Min Jung Kim
2Department of Applied Chemistry, College of Applied Sciences, Kyung Hee University, Yong-in 446-701, Republic of Korea
Sandra Hellberg
3Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden
Chan Hyun Na
4Department of Neurology, Institute for Cell Engineering, Johns Hopkins University School of Medicine, Baltimore, MD, USA
Mikael Benson
5Centre for Personalised Medicine, Linköping University, Linköping, Sweden
David Gomez-Cabrero
6Navarrabiomed, Complejo Hospitalario de Navarra, Universidad Pública de Navarra, IdiSNA, 31008 Pamplona, Spain
Ingrid Kockum
7Department of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institute, 171 77, Stockholm, Sweden
Jesper Tegnér
8Biological and Environmental Sciences and Engineering Division, Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955–6900, Saudi Arabia
9Unit of Computational Medicine, Department of Medicine, Solna, Center for Molecular Medicine, Karolinska Institutet, Stockholm, Sweden
10Science for Life Laboratory, Solna, Sweden
Fredrik Piehl
7Department of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institute, 171 77, Stockholm, Sweden
Maja Jagodic
7Department of Clinical Neuroscience, Center for Molecular Medicine, Karolinska Institute, 171 77, Stockholm, Sweden
Johan Mellergård
11Department of Neurology, Linköping University, Linköping, Sweden
Claudio Altafini
12Department of Automatic Control, Linköping University, Linköping, Sweden
Jan Ernerudh
13Department of Clinical Immunology and Transfusion Medicine and Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden
Maria C. Jenmalm
3Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden
Colm E. Nestor
3Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden
Min-Sik Kim
14Department of New Biology, Daegu Gyeongbuk Institute of Science and Technology, Daegu 711-873, Republic of Korea
Mika Gustafsson
1Bioinformatics, Department of Physics, Chemistry and Biology, Linköping University, Linköping, Sweden
Posted February 21, 2020.
A validated strategy to infer protein biomarkers from RNA-Seq by combining multiple mRNA splice variants and time-delay
Rasmus Magnusson, Olof Rundquist, Min Jung Kim, Sandra Hellberg, Chan Hyun Na, Mikael Benson, David Gomez-Cabrero, Ingrid Kockum, Jesper Tegnér, Fredrik Piehl, Maja Jagodic, Johan Mellergård, Claudio Altafini, Jan Ernerudh, Maria C. Jenmalm, Colm E. Nestor, Min-Sik Kim, Mika Gustafsson
bioRxiv 599373; doi: https://doi.org/10.1101/599373
A validated strategy to infer protein biomarkers from RNA-Seq by combining multiple mRNA splice variants and time-delay
Rasmus Magnusson, Olof Rundquist, Min Jung Kim, Sandra Hellberg, Chan Hyun Na, Mikael Benson, David Gomez-Cabrero, Ingrid Kockum, Jesper Tegnér, Fredrik Piehl, Maja Jagodic, Johan Mellergård, Claudio Altafini, Jan Ernerudh, Maria C. Jenmalm, Colm E. Nestor, Min-Sik Kim, Mika Gustafsson
bioRxiv 599373; doi: https://doi.org/10.1101/599373
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