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Google searches accurately forecast RSV hospitalizations

Benjamin M Althouse, Daniel M Weinberger, Samuel V Scarpino, Virginia E Pitzer, John W Ayers, Edward Wenger, Isaac Chun-Hai Fung, Mark Dredze, Hao Hu
doi: https://doi.org/10.1101/607119
Benjamin M Althouse
1Institute for Disease Modeling, Bellevue, WA, USA
2University of Washington, Seattle, WA, USA
3New Mexico State University, Las Cruces, NM, USA
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  • For correspondence: balthouse@idmod.org
Daniel M Weinberger
4Yale School of Public Health, New Haven, CT
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Samuel V Scarpino
5Network Science Institute, Northeastern University, Boston, MA, 02115, USA
6Marine & Environmental Sciences, Northeastern University, Boston, MA, 02115, USA
7Physics, Northeastern University, Boston, MA, 02115, USA
8Health Sciences, Northeastern University, Boston, MA, 02115, USA
9ISI Foundation, 10126 Turin, Italy
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Virginia E Pitzer
4Yale School of Public Health, New Haven, CT
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John W Ayers
10Div. Infectious Disease & Global Public Health, University of California San Diego, San Diego, CA
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Edward Wenger
1Institute for Disease Modeling, Bellevue, WA, USA
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Isaac Chun-Hai Fung
11Department of Biostatistics, Epidemiology and Environmental Health Sciences, Jiann-Ping Hsu College of Public Health, Georgia Southern University, Statesboro, GA
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Mark Dredze
12Department of Computer Science, Johns Hopkins University, Baltimore, MD
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Hao Hu
1Institute for Disease Modeling, Bellevue, WA, USA
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Abstract

Background Hospitalization of children with respiratory syncytial virus (RSV) is common and costly. Traditional sources of hospitalization data, useful for public health decision-makers and physicians to make decisions, are themselves costly to acquire and are subject to delays from gathering to publication. Here we use Google searches for RSV as a proxy for RSV hospitalizations.

Methods Searches for “RSV” and numbers of RSV hospitalizations in WA, MD, FL, and CT were examined from 2004–2018. Running correlation coefficients and phase angles between search and hospitalizations were calculated. Various machine learning models were compared to assess the ability of searches to forecast hospitalizations. Using search data from all 50 US states, we use K-means clustering to identify RSV transmission clusters. We calculate the timing of the optimal timing of RSV prophylaxis initiation as the week beginning the 24-week period covering 95% of all RSV cases.

Results High correlations (> 0.95) and low phase differences were seen between counts of hospitalizations and search volume in WA, MD, FL, and CT. Searching for RSV began in FL and radiated outward and three distinct transmission clusters were identified: the south and northeast, the northwest and Appalachia, and the center of the country. Calculated initiation dates for prophylaxis closely followed those calculated using traditional data sources (correlation = 0.84).

Conclusions This work validates searches as a proxy for RSV hospitalizations. Search query surveillance of RSV is a rapid and no-cost addition to traditional RSV hospitalization surveillance and may be useful for medical and public health decision-making.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted April 26, 2019.
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Google searches accurately forecast RSV hospitalizations
Benjamin M Althouse, Daniel M Weinberger, Samuel V Scarpino, Virginia E Pitzer, John W Ayers, Edward Wenger, Isaac Chun-Hai Fung, Mark Dredze, Hao Hu
bioRxiv 607119; doi: https://doi.org/10.1101/607119
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Google searches accurately forecast RSV hospitalizations
Benjamin M Althouse, Daniel M Weinberger, Samuel V Scarpino, Virginia E Pitzer, John W Ayers, Edward Wenger, Isaac Chun-Hai Fung, Mark Dredze, Hao Hu
bioRxiv 607119; doi: https://doi.org/10.1101/607119

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