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A Pandas complex adapted for piRNA-guided transposon silencing

Kang Zhao, Sha Cheng, Na Miao, Ping Xu, Xiaohua Lu, Yuhan Zhang, Ming Wang, Xuan Ouyang, Xun Yuan, Weiwei Liu, Xin Lu, Peng Zhou, Jiaqi Gu, Yiqun Zhang, Ding Qiu, Zhaohui Jin, Chen Su, Chao Peng, Jian-Hua Wang, Meng-Qiu Dong, Youzhong Wan, Jinbiao Ma, Hong Cheng, Ying Huang, View ORCID ProfileYang Yu
doi: https://doi.org/10.1101/608273
Kang Zhao
1Institute of Biophysics, Key Laboratory of RNA Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing, China, 100101
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Sha Cheng
2State Key Laboratory of Molecular Biology, Shanghai Key Laboratory of Molecular Andrology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai, China, 200031
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Na Miao
1Institute of Biophysics, Key Laboratory of RNA Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing, China, 100101
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Ping Xu
1Institute of Biophysics, Key Laboratory of RNA Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing, China, 100101
3School of Life Sciences, National Engineering Laboratory of AIDS Vaccine, Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, Jilin University, Changchun, Jilin, China, 130012
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Xiaohua Lu
1Institute of Biophysics, Key Laboratory of RNA Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing, China, 100101
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Yuhan Zhang
2State Key Laboratory of Molecular Biology, Shanghai Key Laboratory of Molecular Andrology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai, China, 200031
4State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai, China, 200438
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Ming Wang
1Institute of Biophysics, Key Laboratory of RNA Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing, China, 100101
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Xuan Ouyang
1Institute of Biophysics, Key Laboratory of RNA Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing, China, 100101
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Xun Yuan
2State Key Laboratory of Molecular Biology, Shanghai Key Laboratory of Molecular Andrology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai, China, 200031
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Weiwei Liu
1Institute of Biophysics, Key Laboratory of RNA Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing, China, 100101
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Xin Lu
1Institute of Biophysics, Key Laboratory of RNA Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing, China, 100101
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Peng Zhou
1Institute of Biophysics, Key Laboratory of RNA Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing, China, 100101
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Jiaqi Gu
1Institute of Biophysics, Key Laboratory of RNA Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing, China, 100101
4State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai, China, 200438
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Yiqun Zhang
1Institute of Biophysics, Key Laboratory of RNA Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing, China, 100101
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Ding Qiu
1Institute of Biophysics, Key Laboratory of RNA Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing, China, 100101
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Zhaohui Jin
2State Key Laboratory of Molecular Biology, Shanghai Key Laboratory of Molecular Andrology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai, China, 200031
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Chen Su
5National Facility for Protein Science in Shanghai, Zhangjiang Lab, Shanghai Science Research Center, Chinese Academy of Sciences, Shanghai, China, 201210
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Chao Peng
5National Facility for Protein Science in Shanghai, Zhangjiang Lab, Shanghai Science Research Center, Chinese Academy of Sciences, Shanghai, China, 201210
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Jian-Hua Wang
6Graduate School of Peking Union Medical College and Chinese Academy of Sciences of Medical Sciences, Beijing, China, 100730
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Meng-Qiu Dong
7National Institute of Biological Sciences, Beijing, China, 102206
8Tsinghua Institute of Multidisciplinary Biomedical Research, Tsinghua University, Beijing, China, 100084
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Youzhong Wan
3School of Life Sciences, National Engineering Laboratory of AIDS Vaccine, Key Laboratory for Molecular Enzymology and Engineering of Ministry of Education, Jilin University, Changchun, Jilin, China, 130012
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Jinbiao Ma
4State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai, China, 200438
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Hong Cheng
2State Key Laboratory of Molecular Biology, Shanghai Key Laboratory of Molecular Andrology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai, China, 200031
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Ying Huang
2State Key Laboratory of Molecular Biology, Shanghai Key Laboratory of Molecular Andrology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai, China, 200031
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  • For correspondence: yuyang@ibp.ac.cn huangy@sibcb.ac.cn
Yang Yu
1Institute of Biophysics, Key Laboratory of RNA Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Beijing, China, 100101
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  • ORCID record for Yang Yu
  • For correspondence: yuyang@ibp.ac.cn huangy@sibcb.ac.cn
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Abstract

The repression of transposons by the Piwi-interacting RNA (piRNA) pathway is essential to protect animal germ cells. In Drosophila ovaries, Panoramix (Panx) enforces transcriptional silencing by binding to the target-engaged Piwi-piRNA complex, although the precise mechanisms by which this occurs remain elusive. Here, we show that Panx functions together with a germline specific paralogue of a nuclear export factor, dNxf2, and its cofactor dNxt1 (p15), as a ternary complex to suppress transposon expression. Structural and functional analyses demonstrate that dNxf2 binds Panx via its UBA domain, which plays an important role in transposon silencing. Unexpectedly, dNxf2 interacts directly with dNxf1 (TAP), a general nuclear export factor. As a result, dNxf2 prevents dNxf1 from binding to the FG repeats of the nuclear pore complex, a process required for proper RNA export. Transient tethering of dNxf2 to nascent transcripts leads to their nuclear retention. Therefore, we propose that dNxf2 may function as a Pandas (Panoramix-dNxf2 dependent TAP/p15 silencing) complex, which counteracts the canonical RNA exporting machinery and restricts transposons to the nuclear peripheries. Our findings may have broader implications for understanding how RNA metabolism modulates epigenetic gene silencing and heterochromatin formation.

Footnotes

  • We added new evidences to demonstrate that dNxf2 interacts with dNxf1. Most importantly, we showed that dNxf2 can compete dNxf1 off from the FG repeats of Nup, providing key evidence how dNxf2 blocks dNxf1 from exporting nascent transposon RNAs.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted June 07, 2019.
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A Pandas complex adapted for piRNA-guided transposon silencing
Kang Zhao, Sha Cheng, Na Miao, Ping Xu, Xiaohua Lu, Yuhan Zhang, Ming Wang, Xuan Ouyang, Xun Yuan, Weiwei Liu, Xin Lu, Peng Zhou, Jiaqi Gu, Yiqun Zhang, Ding Qiu, Zhaohui Jin, Chen Su, Chao Peng, Jian-Hua Wang, Meng-Qiu Dong, Youzhong Wan, Jinbiao Ma, Hong Cheng, Ying Huang, Yang Yu
bioRxiv 608273; doi: https://doi.org/10.1101/608273
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A Pandas complex adapted for piRNA-guided transposon silencing
Kang Zhao, Sha Cheng, Na Miao, Ping Xu, Xiaohua Lu, Yuhan Zhang, Ming Wang, Xuan Ouyang, Xun Yuan, Weiwei Liu, Xin Lu, Peng Zhou, Jiaqi Gu, Yiqun Zhang, Ding Qiu, Zhaohui Jin, Chen Su, Chao Peng, Jian-Hua Wang, Meng-Qiu Dong, Youzhong Wan, Jinbiao Ma, Hong Cheng, Ying Huang, Yang Yu
bioRxiv 608273; doi: https://doi.org/10.1101/608273

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