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A programmable DNA-origami platform for studying protein-mediated lipid transfer between bilayers

Xin Bian, Zhao Zhang, Pietro De Camilli, Chenxiang Lin
doi: https://doi.org/10.1101/610212
Xin Bian
1Department of Cell Biology, Yale University School of Medicine, New Haven, CT, 06520, USA
2Department of Neuroscience, Yale University School of Medicine, New Haven, Connecticut 06510, USA
3Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, Connecticut 06510, USA
4Program in Cellular Neuroscience, Neurodegeneration and Repair, Yale University School of Medicine, New Haven, Connecticut 06510, USA
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Zhao Zhang
1Department of Cell Biology, Yale University School of Medicine, New Haven, CT, 06520, USA
5Nanobiology Institute, Yale University School of Medicine, West Haven, CT, 06516, USA
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Pietro De Camilli
1Department of Cell Biology, Yale University School of Medicine, New Haven, CT, 06520, USA
2Department of Neuroscience, Yale University School of Medicine, New Haven, Connecticut 06510, USA
3Howard Hughes Medical Institute, Yale University School of Medicine, New Haven, Connecticut 06510, USA
4Program in Cellular Neuroscience, Neurodegeneration and Repair, Yale University School of Medicine, New Haven, Connecticut 06510, USA
6Kavli Institute for Neuroscience, Yale University School of Medicine, New Haven, Connecticut 06510, USA
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  • For correspondence: pietro.decamilli@yale.edu chenxiang.lin@yale.edu
Chenxiang Lin
1Department of Cell Biology, Yale University School of Medicine, New Haven, CT, 06520, USA
5Nanobiology Institute, Yale University School of Medicine, West Haven, CT, 06516, USA
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  • For correspondence: pietro.decamilli@yale.edu chenxiang.lin@yale.edu
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Abstract

Non-vesicular lipid transport between bilayers at membrane contact sites plays important physiological roles. Mechanistic insight into the action of lipid transport proteins localized at these sites (bridge/tunnel versus shuttle models) requires a determination of the distance between bilayers at which this transport can occur. Here, we developed DNA-origami nanostructures to organize size-defined liposomes at precise distances and used them to study lipid transfer by the SMP domain of E-Syt1. Pairs of DNA ring-templated donor and acceptor liposomes were docked through DNA pillars, which determined their distance. The SMP domain was anchored to donor liposomes via an unstructured linker and lipid transfer was assessed via a FRET-based assay. We show that lipid transfer can occur over distances that exceed the length of SMP dimer, compatible with a shuttle model. The DNA nanostructures developed here can be adapted to study other processes occurring where two membranes are closely apposed to each other.

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Posted April 15, 2019.
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A programmable DNA-origami platform for studying protein-mediated lipid transfer between bilayers
Xin Bian, Zhao Zhang, Pietro De Camilli, Chenxiang Lin
bioRxiv 610212; doi: https://doi.org/10.1101/610212
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A programmable DNA-origami platform for studying protein-mediated lipid transfer between bilayers
Xin Bian, Zhao Zhang, Pietro De Camilli, Chenxiang Lin
bioRxiv 610212; doi: https://doi.org/10.1101/610212

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