DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning

Jacob M. Graving; Daniel Chae; Hemal Naik; Liang Li; Benjamin Koger; Blair R. Costelloe; Iain D. Couzin

doi:10.1101/620245

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DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning

View ORCID ProfileJacob M. Graving, Daniel Chae, Hemal Naik, Liang Li, Benjamin Koger, View ORCID ProfileBlair R. Costelloe, View ORCID ProfileIain D. Couzin

doi: https://doi.org/10.1101/620245

Jacob M. Graving

1Department of Collective Behaviour, Max Planck Institute of Animal Behavior, 78464 Konstanz, Germany

2Department of Biology, University of Konstanz, 78464 Konstanz, Germany

3Centre for the Advanced Study of Collective Behaviour, University of Konstanz, 78464 Konstanz, Germany

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ORCID record for Jacob M. Graving
For correspondence: jgraving@gmail.com icouzin@ab.mpg.de

Daniel Chae

4Department of Computer Science, Princeton University, 08544 Princeton, NJ, USA

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Hemal Naik

1Department of Collective Behaviour, Max Planck Institute of Animal Behavior, 78464 Konstanz, Germany

2Department of Biology, University of Konstanz, 78464 Konstanz, Germany

3Centre for the Advanced Study of Collective Behaviour, University of Konstanz, 78464 Konstanz, Germany

5Chair for Computer Aided Medical Procedures, Technische Universität München, 80333 Munich, Germany

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Liang Li

1Department of Collective Behaviour, Max Planck Institute of Animal Behavior, 78464 Konstanz, Germany

2Department of Biology, University of Konstanz, 78464 Konstanz, Germany

3Centre for the Advanced Study of Collective Behaviour, University of Konstanz, 78464 Konstanz, Germany

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Benjamin Koger

1Department of Collective Behaviour, Max Planck Institute of Animal Behavior, 78464 Konstanz, Germany

2Department of Biology, University of Konstanz, 78464 Konstanz, Germany

3Centre for the Advanced Study of Collective Behaviour, University of Konstanz, 78464 Konstanz, Germany

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Blair R. Costelloe

1Department of Collective Behaviour, Max Planck Institute of Animal Behavior, 78464 Konstanz, Germany

2Department of Biology, University of Konstanz, 78464 Konstanz, Germany

3Centre for the Advanced Study of Collective Behaviour, University of Konstanz, 78464 Konstanz, Germany

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ORCID record for Blair R. Costelloe

Iain D. Couzin

1Department of Collective Behaviour, Max Planck Institute of Animal Behavior, 78464 Konstanz, Germany

2Department of Biology, University of Konstanz, 78464 Konstanz, Germany

3Centre for the Advanced Study of Collective Behaviour, University of Konstanz, 78464 Konstanz, Germany

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ORCID record for Iain D. Couzin
For correspondence: jgraving@gmail.com icouzin@ab.mpg.de

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https://github.com/jgraving/deepposekit
https://github.com/jgraving/deepposekit-annotator
https://github.com/jgraving/deepposekit-data

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Posted September 04, 2019.

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DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning

Jacob M. Graving, Daniel Chae, Hemal Naik, Liang Li, Benjamin Koger, Blair R. Costelloe, Iain D. Couzin

bioRxiv 620245; doi: https://doi.org/10.1101/620245

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DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning

Jacob M. Graving, Daniel Chae, Hemal Naik, Liang Li, Benjamin Koger, Blair R. Costelloe, Iain D. Couzin

bioRxiv 620245; doi: https://doi.org/10.1101/620245

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