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Single-cell Transcriptome Mapping Identifies Common and Cell-type Specific Genes Affected by Acute Delta9-tetrahydrocannabinol in Humans

Ying Hu, Mohini Ranganathan, Chang Shu, Xiaoyu Liang, Suhas Ganesh, Chunhua Yan, Xinyu Zhang, Bradley E Aouizerat, John H Krystal, Deepak C. D’Souza, Ke Xu
doi: https://doi.org/10.1101/638254
Ying Hu
1Center for Biomedical Information and Information Technology, National Cancer Institute, MD, U.S.A.
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Mohini Ranganathan
2Department of Psychiatry, Yale School of Medicine, New Haven, CT, 06516
3Connecticut Veteran Healthcare System, West Haven, CT, 06515
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Chang Shu
2Department of Psychiatry, Yale School of Medicine, New Haven, CT, 06516
3Connecticut Veteran Healthcare System, West Haven, CT, 06515
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Xiaoyu Liang
2Department of Psychiatry, Yale School of Medicine, New Haven, CT, 06516
3Connecticut Veteran Healthcare System, West Haven, CT, 06515
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Suhas Ganesh
2Department of Psychiatry, Yale School of Medicine, New Haven, CT, 06516
3Connecticut Veteran Healthcare System, West Haven, CT, 06515
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Chunhua Yan
1Center for Biomedical Information and Information Technology, National Cancer Institute, MD, U.S.A.
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Xinyu Zhang
2Department of Psychiatry, Yale School of Medicine, New Haven, CT, 06516
3Connecticut Veteran Healthcare System, West Haven, CT, 06515
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Bradley E Aouizerat
4Bluestone Center for Clinical Research, College of Dentistry, New York University, NY, 10010
5Department of Oral and Maxillofacial Surgery, College of Dentistry, New York University, NY, 10010
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John H Krystal
2Department of Psychiatry, Yale School of Medicine, New Haven, CT, 06516
3Connecticut Veteran Healthcare System, West Haven, CT, 06515
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Deepak C. D’Souza
2Department of Psychiatry, Yale School of Medicine, New Haven, CT, 06516
3Connecticut Veteran Healthcare System, West Haven, CT, 06515
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Ke Xu
2Department of Psychiatry, Yale School of Medicine, New Haven, CT, 06516
3Connecticut Veteran Healthcare System, West Haven, CT, 06515
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  • For correspondence: ke.xu@yale.edu
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Abstract

Delta 9-tetrahydrocannabinol (THC), the principal psychoactive constituent of cannabis, is also known to modulate immune response in peripheral cells. The mechanisms of THC’s effects on gene expression in human immune cells remains poorly understood. Combining a within-subject design with single cell transcriptome mapping, we report that administration of THC acutely alters gene expression in 15,973 human blood immune cells. Controlled for high inter-individual transcriptomic variability, we identified 294 transcriptome-wide significant genes among eight cell types including 69 common genes and 225 cell-type specific genes affected by acute THC administration, including those genes involving not only in immune response, cytokine production, but signal transduction, and cell proliferation and apoptosis. We revealed distinct transcriptomic sub-clusters affected by THC in major immune cell types where THC perturbed cell type-specific intracellular gene expression correlations. Gene set enrichment analysis further supports the findings of THC’s common and cell-type specific effects on immune response and cell toxicity. We found that THC alters the correlation of cannabinoid receptor gene, CNR2, with other genes in B cells, in which CNR2 showed the highest level of expression. This comprehensive cell-specific transcriptomic profiling identified novel genes regulated by THC and provides important insights into THC’s acute effects on immune function that may have important medical implications.

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Posted May 17, 2019.
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Single-cell Transcriptome Mapping Identifies Common and Cell-type Specific Genes Affected by Acute Delta9-tetrahydrocannabinol in Humans
Ying Hu, Mohini Ranganathan, Chang Shu, Xiaoyu Liang, Suhas Ganesh, Chunhua Yan, Xinyu Zhang, Bradley E Aouizerat, John H Krystal, Deepak C. D’Souza, Ke Xu
bioRxiv 638254; doi: https://doi.org/10.1101/638254
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Single-cell Transcriptome Mapping Identifies Common and Cell-type Specific Genes Affected by Acute Delta9-tetrahydrocannabinol in Humans
Ying Hu, Mohini Ranganathan, Chang Shu, Xiaoyu Liang, Suhas Ganesh, Chunhua Yan, Xinyu Zhang, Bradley E Aouizerat, John H Krystal, Deepak C. D’Souza, Ke Xu
bioRxiv 638254; doi: https://doi.org/10.1101/638254

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