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CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data

View ORCID ProfileVanessa R. Marcelino, Philip T.L.C. Clausen, Jan P. Buchmann, View ORCID ProfileMichelle Wille, Jonathan R. Iredell, View ORCID ProfileWieland Meyer, View ORCID ProfileOle Lund, View ORCID ProfileTania C. Sorrell, View ORCID ProfileEdward C. Holmes
doi: https://doi.org/10.1101/641332
Vanessa R. Marcelino
1Marie Bashir Institute for Infectious Diseases and Biosecurity and Faculty of Medicine and Health, Sydney Medical School, Westmead Clinical School, The University of Sydney, Sydney, NSW 2006, Australia
2Centre for Infectious Diseases and Microbiology, Westmead Institute for Medical Research, Westmead, NSW 2145, Australia
4School of Life & Environmental Sciences, Charles Perkins Centre, The University of Sydney, Sydney, NSW 2006, Australia
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  • For correspondence: vanessa.marcelino@sydney.edu.au
Philip T.L.C. Clausen
3National Food Institute, Technical University of Denmark, 2800 Kgs Lyngby, Denmark
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Jan P. Buchmann
4School of Life & Environmental Sciences, Charles Perkins Centre, The University of Sydney, Sydney, NSW 2006, Australia
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Michelle Wille
5WHO Collaborating Centre for Reference and Research on Influenza, at The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC 3000, Australia
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Jonathan R. Iredell
2Centre for Infectious Diseases and Microbiology, Westmead Institute for Medical Research, Westmead, NSW 2145, Australia
6Westmead Hospital (Research and Education Network), Westmead, NSW 2145, Australia
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Wieland Meyer
1Marie Bashir Institute for Infectious Diseases and Biosecurity and Faculty of Medicine and Health, Sydney Medical School, Westmead Clinical School, The University of Sydney, Sydney, NSW 2006, Australia
7Molecular Mycology Research Laboratory, Centre for Infectious Diseases and Microbiology, Westmead Institute for Medical Research, Westmead, NSW 2145, Australia
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Ole Lund
3National Food Institute, Technical University of Denmark, 2800 Kgs Lyngby, Denmark
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Tania C. Sorrell
1Marie Bashir Institute for Infectious Diseases and Biosecurity and Faculty of Medicine and Health, Sydney Medical School, Westmead Clinical School, The University of Sydney, Sydney, NSW 2006, Australia
2Centre for Infectious Diseases and Microbiology, Westmead Institute for Medical Research, Westmead, NSW 2145, Australia
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Edward C. Holmes
1Marie Bashir Institute for Infectious Diseases and Biosecurity and Faculty of Medicine and Health, Sydney Medical School, Westmead Clinical School, The University of Sydney, Sydney, NSW 2006, Australia
4School of Life & Environmental Sciences, Charles Perkins Centre, The University of Sydney, Sydney, NSW 2006, Australia
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Article Information

doi 
https://doi.org/10.1101/641332
History 
  • May 18, 2019.

Article Versions

  • Version 1 (May 17, 2019 - 15:10).
  • You are viewing Version 2, the most recent version of this article.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.

Author Information

  1. Vanessa R. Marcelino1,2,4,#,
  2. Philip T.L.C. Clausen3,
  3. Jan P. Buchmann4,
  4. Michelle Wille5,
  5. Jonathan R. Iredell2,6,
  6. Wieland Meyer1,7,
  7. Ole Lund3,
  8. Tania C. Sorrell1,2 and
  9. Edward C. Holmes1,4
  1. 1Marie Bashir Institute for Infectious Diseases and Biosecurity and Faculty of Medicine and Health, Sydney Medical School, Westmead Clinical School, The University of Sydney, Sydney, NSW 2006, Australia
  2. 2Centre for Infectious Diseases and Microbiology, Westmead Institute for Medical Research, Westmead, NSW 2145, Australia
  3. 3National Food Institute, Technical University of Denmark, 2800 Kgs Lyngby, Denmark
  4. 4School of Life & Environmental Sciences, Charles Perkins Centre, The University of Sydney, Sydney, NSW 2006, Australia
  5. 5WHO Collaborating Centre for Reference and Research on Influenza, at The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC 3000, Australia
  6. 6Westmead Hospital (Research and Education Network), Westmead, NSW 2145, Australia
  7. 7Molecular Mycology Research Laboratory, Centre for Infectious Diseases and Microbiology, Westmead Institute for Medical Research, Westmead, NSW 2145, Australia
  1. ↵#Corresponding author: Vanessa R. Marcelino E-mail: vanessa.marcelino{at}sydney.edu.au
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CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data
Vanessa R. Marcelino, Philip T.L.C. Clausen, Jan P. Buchmann, Michelle Wille, Jonathan R. Iredell, Wieland Meyer, Ole Lund, Tania C. Sorrell, Edward C. Holmes
bioRxiv 641332; doi: https://doi.org/10.1101/641332
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CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data
Vanessa R. Marcelino, Philip T.L.C. Clausen, Jan P. Buchmann, Michelle Wille, Jonathan R. Iredell, Wieland Meyer, Ole Lund, Tania C. Sorrell, Edward C. Holmes
bioRxiv 641332; doi: https://doi.org/10.1101/641332

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