New Results
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
View ORCID ProfileNaihui Zhou, Yuxiang Jiang, Timothy R Bergquist, Alexandra J Lee, View ORCID ProfileBalint Z Kacsoh, Alex W Crocker, View ORCID ProfileKimberley A Lewis, View ORCID ProfileGeorge Georghiou, Huy N Nguyen, View ORCID ProfileMd Nafiz Hamid, Larry Davis, Tunca Dogan, Volkan Atalay, Ahmet S Rifaioglu, Alperen Dalkiran, Rengul Cetin-Atalay, Chengxin Zhang, Rebecca L Hurto, Peter L Freddolino, Yang Zhang, Prajwal Bhat, Fran Supek, José M Fernández, Branislava Gemovic, Vladimir R Perovic, Radoslav S Davidović, Neven Sumonja, Nevena Veljkovic, Ehsaneddin Asgari, Mohammad RK Mofrad, Giuseppe Profiti, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Florian Boecker, Indika Kahanda, Natalie Thurlby, Alice C McHardy, Alexandre Renaux, Rabie Saidi, Julian Gough, Alex A Freitas, Magdalena Antczak, Fabio Fabris, Mark N Wass, Jie Hou, Jianlin Cheng, Jie Hou, Zheng Wang, Alfonso E Romero, Alberto Paccanaro, Haixuan Yang, Tatyana Goldberg, Chenguang Zhao, Liisa Holm, Petri Törönen, Alan J Medlar, Elaine Zosa, Itamar Borukhov, Ilya Novikov, Angela Wilkins, Olivier Lichtarge, Po-Han Chi, Wei-Cheng Tseng, Michal Linial, Peter W Rose, Christophe Dessimoz, Vedrana Vidulin, Saso Dzeroski, Ian Sillitoe, Sayoni Das, Jonathan Gill Lees, David T Jones, Cen Wan, Domenico Cozzetto, Rui Fa, Mateo Torres, Alex Wiarwick Vesztrocy, Jose Manuel Rodriguez, Michael L Tress, Marco Frasca, Marco Notaro, Giuliano Grossi, Alessandro Petrini, Matteo Re, Giorgio Valentini, Marco Mesiti, Daniel B Roche, Jonas Reeb, David W Ritchie, Sabeur Aridhi, Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, Da Chen Emily Koo, Richard Bonneau, Vladimir Gligorijević, Meet Barot, Hai Fang, Stefano Toppo, Enrico Lavezzo, Marco Falda, Michele Berselli, Silvio CE Tosatto, Marco Carraro, Damiano Piovesan, Hafeez Ur Rehman, Qizhong Mao, Shanshan Zhang, Slobodan Vucetic, Gage S Black, Dane Jo, Dallas J Larsen, Ashton R Omdahl, Luke W Sagers, Erica Suh, Jonathan B Dayton, Liam J McGuffin, Danielle A Brackenridge, Patricia C Babbitt, Jeffrey M Yunes, Paolo Fontana, Feng Zhang, Shanfeng Zhu, Ronghui You, Zihan Zhang, Suyang Dai, Shuwei Yao, Weidong Tian, Renzhi Cao, Caleb Chandler, Miguel Amezola, Devon Johnson, Jia-Ming Chang, Wen-Hung Liao, Yi-Wei Liu, Stefano Pascarelli, Yotam Frank, Robert Hoehndorf, Maxat Kulmanov, Imane Boudellioua, Gianfranco Politano, Stefano Di Carlo, Alfredo Benso, Kai Hakala, Filip Ginter, Farrokh Mehryary, Suwisa Kaewphan, Jari Björne, Hans Moen, Martti E E Tolvanen, Tapio Salakoski, Daisuke Kihara, Aashish Jain, Tomislav Šmuc, Adrian Altenhoff, Asa Ben-Hur, View ORCID ProfileBurkhard Rost, View ORCID ProfileSteven E Brenner, View ORCID ProfileChristine A Orengo, Constance J Jeffery, View ORCID ProfileGiovanni Bosco, View ORCID ProfileDeborah A Hogan, View ORCID ProfileMaria J Martin, Claire O’Donovan, View ORCID ProfileSean D Mooney, View ORCID ProfileCasey S Greene, View ORCID ProfilePredrag Radivojac, View ORCID ProfileIddo Friedberg
doi: https://doi.org/10.1101/653105
Naihui Zhou
1Veterinary Microbiology and Preventive Medicine, Iowa State University
2Program in Bioinformatics and Computational Biology, Iowa State University, Ames, IA, USA
Yuxiang Jiang
3Indiana University Bloomington, Bloomington, Indiana, USA
Timothy R Bergquist
4Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA, USA
Alexandra J Lee
5Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA, USA
Balint Z Kacsoh
6Department of Molecular and Systems Biology, Geisel School of Medicine at Dartmouth
7Department of Molecular and Systems Biology, Hanover, NH, USA
Alex W Crocker
8Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, NH, USA
Kimberley A Lewis
8Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, NH, USA
George Georghiou
9European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom
Huy N Nguyen
1Veterinary Microbiology and Preventive Medicine, Iowa State University
10Program in Computer Science, Iowa State University, Ames, IA, USA
Md Nafiz Hamid
1Veterinary Microbiology and Preventive Medicine, Iowa State University
2Program in Bioinformatics and Computational Biology, Iowa State University, Ames, IA, USA
Larry Davis
2Program in Bioinformatics and Computational Biology, Iowa State University, Ames, IA, USA
Tunca Dogan
12Graduate School of Informatics, Middle East Technical University (METU)
13European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI)
Volkan Atalay
14Department of Computer Engineering, Middle East Technical University (METU)
Ahmet S Rifaioglu
14Department of Computer Engineering, Middle East Technical University (METU)
16Department of Computer Engineering, Iskenderun Technical University, Hatay, Turkey, Ankara, Turkey
Alperen Dalkiran
17Department of Computer Engineering, Middle East Technical University (METU), Ankara, Turkey
Rengul Cetin-Atalay
18CanSyL, Graduate School of Informatics, Middle East Technical University (METU), Ankara, Select a State or Province, Turkey
Chengxin Zhang
19Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA
Rebecca L Hurto
20Department of Biological Chemistry, University of Michigan, Ann Arbor, MI, USA
Peter L Freddolino
21Department of Biological Chemistry, University of Michigan
22Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA
Yang Zhang
23Department of Computational Medicine and Bioinformatics, University of Michigan
24Department of Biological Chemistry, University of Michigan, Ann Arbor, MI, USA
Prajwal Bhat
25Achira Labs, Bangalore, India
Fran Supek
26Institute for Research in Biomedicine (IRB Barcelona)
27Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain
José M Fernández
28INB Coordination Unit, Life Sciences Department, Barcelona Supercomputing Center
29(former) INB GN2, Structural and Computational Biology Programme, Spanish National Cancer Research Centre, Barcelona, Catalonia, Spain
Branislava Gemovic
30Laboratory for Bioinformatics and Computational Chemistry, Institute of Nuclear Sciences VINCA, University of Belgrade, Belgrade, Serbia
Vladimir R Perovic
31Laboratory for Bionformatics and Computational Chemistry, Institute of Nuclear Sciences VINCA, University of Belgrade, Belgrade, Serbia
Radoslav S Davidović
30Laboratory for Bioinformatics and Computational Chemistry, Institute of Nuclear Sciences VINCA, University of Belgrade, Belgrade, Serbia
Neven Sumonja
30Laboratory for Bioinformatics and Computational Chemistry, Institute of Nuclear Sciences VINCA, University of Belgrade, Belgrade, Serbia
Nevena Veljkovic
30Laboratory for Bioinformatics and Computational Chemistry, Institute of Nuclear Sciences VINCA, University of Belgrade, Belgrade, Serbia
Ehsaneddin Asgari
32Molecular Cell Biomechanics Laboratory, Departments of Bioengineering, University of California Berkeley
33Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Berkeley, CA, USA
Mohammad RK Mofrad
34Departments of Bioengineering and Mechanical Engineering, Berkeley, CA, USA
Giuseppe Profiti
35Bologna Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna, Italy
36National Research Council, IBIOM, Bologna, Italy
Castrense Savojardo
37Bologna Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna, Italy, Bologna, Italy
Pier Luigi Martelli
37Bologna Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna, Italy, Bologna, Italy
Rita Casadio
37Bologna Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna, Italy, Bologna, Italy
Florian Boecker
38University of Bonn: INRES Crop Bioinformatics, Bonn, North Rhine-Westphalia, Germany
Indika Kahanda
39Gianforte School of Computing, Montana State University, Bozeman, Montana, USA
Natalie Thurlby
40University of Bristol, Computer Science, Bristol, Bristol, United Kingdom
Alice C McHardy
41Computational Biology of Infection Research, Helmholtz Centre for Infection Research
42RESIST, DFG Cluster of Excellence 2155, Brunswick, Germany
Alexandre Renaux
43Interuniversity Institute of Bioinformatics in Brussels, Universite libre de Bruxelles - Vrije Universiteit Brussel
44Machine Learning Group, Artificial Intelligence lab, Vrije Universiteit Brussel, Brussels, Belgium
Rabie Saidi
45European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, UK
Julian Gough
46MRC Laboratory of Molecular Biology, Cambridge, United Kingdom
Alex A Freitas
47University of Kent, School of Computing, Canterbury, United Kingdom
Magdalena Antczak
48School of Biosciences, University of Kent, Canterbury, United Kingdom
Fabio Fabris
47University of Kent, School of Computing, Canterbury, United Kingdom
Mark N Wass
49School of Biosciences, University of Kent, Canterbury, Kent, United Kingdom
Jie Hou
50University of Missouri, Computer Science, Columbia, Missouri, USA
51Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, USA
Jianlin Cheng
51Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, USA
Jie Hou
50University of Missouri, Computer Science, Columbia, Missouri, USA
51Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, USA
Zheng Wang
52University of Miami, Coral Gables, Florida, USA
Alfonso E Romero
53Centre for Systems and Synthetic Biology, Department of Computer Science, Royal Holloway, University of London, Egham, Surrey, United Kingdom
Alberto Paccanaro
54Centre for Systems and Synthetic Biology, Department of Computer Science, Royal Holloway, University of London, Egham, United Kingdom
Haixuan Yang
55School of Mathematics, Statistics and Applied Mathematics. National University of Ireland, Galway, Galway, Ireland
Tatyana Goldberg
56Department of Informatics, Bioinformatics & Computational Biology, Technical University of Munich, Germany, Munich, Germany
Chenguang Zhao
57School of Computing Sciences and Computer Engineering, University of Southern Mississippi, Hattiesburg, Mississippi, USA
Liisa Holm
58Institute of Biotechnology, University of Helsinki, Helsinki, Finland
Petri Törönen
58Institute of Biotechnology, University of Helsinki, Helsinki, Finland
Alan J Medlar
58Institute of Biotechnology, University of Helsinki, Helsinki, Finland
Elaine Zosa
58Institute of Biotechnology, University of Helsinki, Helsinki, Finland
Itamar Borukhov
59Compugen Ltd., Holon, Israel
Ilya Novikov
60Baylor College of Medicine, Department of Biochemistry and Molecular Biology, Houston, TX, USA
Angela Wilkins
61Baylor College of Medicine, Department of Molecular and Human Genetics, Houston, TX, USA
Olivier Lichtarge
61Baylor College of Medicine, Department of Molecular and Human Genetics, Houston, TX, USA
Po-Han Chi
62National TsingHua University, Hsinchu, Taiwan
Wei-Cheng Tseng
63Department of Electrical Engineering in National Tsing Hua University, Hsinchu City, Taiwan
Michal Linial
64The Hebrew University of Jerusalem, Jerusalem, Israel
Peter W Rose
65University of California San Diego, San Diego Supercomputer Center, La Jolla, California, USA
Christophe Dessimoz
66Department of Computational Biology and Center for Integrative Genomics, University of Lausanne, Switzerland
67Department of Genetics, Evolution & Environment, and Department of Computer Science, University College London, UK, Lausanne, Switzerland
Vedrana Vidulin
68Department of Knowledge Technologies, Jozef Stefan Institute, Ljubljana, Slovenia
Saso Dzeroski
69Jozef Stefan Institute
70Jozef Stefan International Postgraduate School, Ljubljana, Slovenia
Ian Sillitoe
71Research Dept.of Structural and Molecular Biology, University College London, London, England
Sayoni Das
72Research Dept.of Structural and Molecular Biology, University College London, London, United Kingdom
Jonathan Gill Lees
73Research Dept.of Structural and Molecular Biology, University College London
74Oxford Brookes University, Department of Health and Life Sciences, Oxford, UK
David T Jones
75University College London, Department of Computer Science
76The Francis Crick Institute, Biomedical Data Science Laboratory, London, United Kingdom
Cen Wan
75University College London, Department of Computer Science
76The Francis Crick Institute, Biomedical Data Science Laboratory, London, United Kingdom
Domenico Cozzetto
75University College London, Department of Computer Science
76The Francis Crick Institute, Biomedical Data Science Laboratory, London, United Kingdom
Rui Fa
75University College London, Department of Computer Science
76The Francis Crick Institute, Biomedical Data Science Laboratory, London, United Kingdom
Mateo Torres
53Centre for Systems and Synthetic Biology, Department of Computer Science, Royal Holloway, University of London, Egham, Surrey, United Kingdom
Alex Wiarwick Vesztrocy
77Department of Genetics, Evolution and Environment, University College London, Gower Street, London, WC1E 6BT, United Kingdom
78SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland, London, United Kingdom
Jose Manuel Rodriguez
79Cardiovascular Proteomics Laboratory, Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain
Michael L Tress
80Bioinformatics Unit, Spanish National Cancer Research Centre (CNIO), Madrid, Spain
Marco Frasca
81Università degli Studi di Milano - Computer Science Dept. - AnacletoLab, Milan, Milan, Italy
Marco Notaro
81Università degli Studi di Milano - Computer Science Dept. - AnacletoLab, Milan, Milan, Italy
Giuliano Grossi
81Università degli Studi di Milano - Computer Science Dept. - AnacletoLab, Milan, Milan, Italy
Alessandro Petrini
81Università degli Studi di Milano - Computer Science Dept. - AnacletoLab, Milan, Milan, Italy
Matteo Re
81Università degli Studi di Milano - Computer Science Dept. - AnacletoLab, Milan, Milan, Italy
Giorgio Valentini
81Università degli Studi di Milano - Computer Science Dept. - AnacletoLab, Milan, Milan, Italy
Marco Mesiti
81Università degli Studi di Milano - Computer Science Dept. - AnacletoLab, Milan, Milan, Italy
Daniel B Roche
82Institut de Biologie Computationnelle, LIRMM, CNRS-UMR 5506, Université de Montpellier, Montpellier, France
Jonas Reeb
83Department of Informatics, Chair of Bioinformatics and Computational Biology, Technical University of Munich, Germany, Munich, Germany
David W Ritchie
84University of Lorraine, CNRS, Inria, LORIA, 54000 Nancy, France, Nancy, France
Sabeur Aridhi
84University of Lorraine, CNRS, Inria, LORIA, 54000 Nancy, France, Nancy, France
Seyed Ziaeddin Alborzi
85University of Lorraine, CNRS, Inria, LORIA, 54000 Nancy, France
86University of Lorraine, Nancy, Lorraine, France
Marie-Dominique Devignes
85University of Lorraine, CNRS, Inria, LORIA, 54000 Nancy, France
87Inria, Nancy, France
Da Chen Emily Koo
88Department of Biology, New York University, New York, NY, USA
Richard Bonneau
89NYU Center for Data Science, New York NY 10010
90Flatiron Institute, CCB, NY NY 10010, New York, NY, USA
Vladimir Gligorijević
91Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation, New York, NY, USA
Meet Barot
92Center for Data Science, New York University, New York, NY 10011, USA, New York, NY, USA
Hai Fang
93Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK
Stefano Toppo
94University of Padova, Department of Molecular Medicine, Padova, Italy
Enrico Lavezzo
94University of Padova, Department of Molecular Medicine, Padova, Italy
Marco Falda
95Dept. of Biology - University of Padova, Padova, Italy
Michele Berselli
94University of Padova, Department of Molecular Medicine, Padova, Italy
Silvio CE Tosatto
96Department of Biomedical Sciences, University of Padua
97CNR Institute of Neuroscience, Padova, Italy
Marco Carraro
98Department of Biomedical Sciences, University of Padua, Padova, Padova, Italy
Damiano Piovesan
99Department of Biomedical Sciences, University of Padua, Padua, Italy
Hafeez Ur Rehman
100Department of Computer Science, National University of Computer and Emerging Sciences, Peshawar, Pakistan., Peshawar, Khyber Pakhtoonkhwa, Pakistan
Qizhong Mao
101Temple University
102University of California, Riverside, Philadelphia, PA, USA
Shanshan Zhang
103Temple University, Philadelphia, PA, USA
Slobodan Vucetic
104Temple University, Department of Computer and Information Sciences, Philadelphia, PA, USA
Gage S Black
105Department of Biology, Brigham Young University
106Bioinformatics Research Group, Provo, UT, USA
Dane Jo
105Department of Biology, Brigham Young University
106Bioinformatics Research Group, Provo, UT, USA
Dallas J Larsen
105Department of Biology, Brigham Young University
106Bioinformatics Research Group, Provo, UT, USA
Ashton R Omdahl
105Department of Biology, Brigham Young University
106Bioinformatics Research Group, Provo, UT, USA
Luke W Sagers
105Department of Biology, Brigham Young University
106Bioinformatics Research Group, Provo, UT, USA
Erica Suh
105Department of Biology, Brigham Young University
106Bioinformatics Research Group, Provo, UT, USA
Jonathan B Dayton
105Department of Biology, Brigham Young University
106Bioinformatics Research Group, Provo, UT, USA
Liam J McGuffin
107School of Biological Sciences, University of Reading, Reading, England, United Kingdom
Danielle A Brackenridge
107School of Biological Sciences, University of Reading, Reading, England, United Kingdom
Patricia C Babbitt
108Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco
109Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, USA
Jeffrey M Yunes
110UC Berkeley - UCSF Graduate Program in Bioengineering, University of California, San Francisco, CA 94158, USA
111Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA 94158, USA, San Francisco, California, USA
Paolo Fontana
112Research and Innovation Center, Edmund Mach Foundation, 38010S. Michele all’Adige, Italy, San Michele all’Adige, Italy
Feng Zhang
113State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Fudan University
114Department of Pediatrics, Brain Tumor Center, Division of Experimental Hematology and Cancer Biology, Shanghai, Shanghai, China
Shanfeng Zhu
115School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China
Ronghui You
115School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China
Zihan Zhang
115School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China
Suyang Dai
116School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, ShangHai, China
Shuwei Yao
117School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, Shanghai, China
Weidong Tian
113State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Fudan University
114Department of Pediatrics, Brain Tumor Center, Division of Experimental Hematology and Cancer Biology, Shanghai, Shanghai, China
Renzhi Cao
118Pacific Lutheran University, Department of Computer Science, Tacoma, WA, USA
Caleb Chandler
118Pacific Lutheran University, Department of Computer Science, Tacoma, WA, USA
Miguel Amezola
118Pacific Lutheran University, Department of Computer Science, Tacoma, WA, USA
Devon Johnson
118Pacific Lutheran University, Department of Computer Science, Tacoma, WA, USA
Jia-Ming Chang
119Department of Computer Science, National Chengchi University, Taipei, Taiwan
Wen-Hung Liao
119Department of Computer Science, National Chengchi University, Taipei, Taiwan
Yi-Wei Liu
119Department of Computer Science, National Chengchi University, Taipei, Taiwan
Stefano Pascarelli
120Okinawa Institute of Science and Technology, Tancha, Okinawa, Japan
Yotam Frank
121Tel Aviv University, Tel Aviv, Israel
Robert Hoehndorf
122Computer, Electrical and Mathematical Sciences & Engineering Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
Maxat Kulmanov
123King Abdullah University of Science and Technology, Computational Bioscience Research Center, Thuwal, Jeddah, Saudi Arabia
Imane Boudellioua
124Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
125Computer, Electrical and Mathematical Sciences Engineering Division (CEMSE), King Abdullah University of Science and Technology, Thuwal, Saudi Arabia, Thuwal, Saudi Arabia
Gianfranco Politano
126Politecnico di Torino, Control and Computer Engineering Department, Torino, TO, Italy
Stefano Di Carlo
126Politecnico di Torino, Control and Computer Engineering Department, Torino, TO, Italy
Alfredo Benso
126Politecnico di Torino, Control and Computer Engineering Department, Torino, TO, Italy
Kai Hakala
127University of Turku, Department of Future Technologies, Turku NLP Group
128University of Turku Graduate School (UTUGS), Turku, Finland
Filip Ginter
127University of Turku, Department of Future Technologies, Turku NLP Group
129University of Turku, Turku, Finland
Farrokh Mehryary
127University of Turku, Department of Future Technologies, Turku NLP Group
128University of Turku Graduate School (UTUGS), Turku, Finland
Suwisa Kaewphan
130Turku Centre for Computer Science (TUCS)
131University of Turku, Department of Future Technologies, Turku, Finland
Jari Björne
132Department of Future Technologies, Faculty of Science and Engineering, University of Turku, FI-20014, Turku, Finland
133Turku Centre for Computer Science (TUCS), Agora, Vesilinnantie 3, FI-20500 TURKU, Turku, Finland
Hans Moen
134University of Turku, Faculty of Science and Engineering, Department of Future Technologies, Turku, Finland
Martti E E Tolvanen
135University of Turku, Department of Future Technologies, Turku, Finland
Tapio Salakoski
132Department of Future Technologies, Faculty of Science and Engineering, University of Turku, FI-20014, Turku, Finland
133Turku Centre for Computer Science (TUCS), Agora, Vesilinnantie 3, FI-20500 TURKU, Turku, Finland
Daisuke Kihara
136Department of Biological Sciences, Department of Computer Science, Purdue University, West Lafayette, IN, 47907, USA
137Department of Pediatrics, University of Cincinnati, Cincinnati, OH, 45229, USA, West Lafayette, IN, USA
Aashish Jain
138Department of Computer Science, Purdue University, West Lafayette, IN, USA
Tomislav Šmuc
139Division of Electronics, Rudjer Boskovic Institute, Zagreb, Croatia
Adrian Altenhoff
140Department of Computer Science, ETH Zurich
141SIB Swiss Institute of Bioinformatics, Zurich, Switzerland
Asa Ben-Hur
142Department of Computer Science, Colorado State University, Fort Collins, CO, USA
Burkhard Rost
143Department of Informatics, Technical University of Munich, Germany
144Institute for Food and Plant Sciences WZW, Technical University of Munich, Weihenstephan, Germany, Munich, Germany
Steven E Brenner
145University of California, Berkeley, Berkeley, CA, USA
Christine A Orengo
72Research Dept.of Structural and Molecular Biology, University College London, London, United Kingdom
Constance J Jeffery
146Biological Sciences, University of Illinois at Chicago, Chicago, Illinois, USA
Giovanni Bosco
147Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, NH, US
Deborah A Hogan
8Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, NH, USA
Maria J Martin
9European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom
Claire O’Donovan
9European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom
Sean D Mooney
4Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA, USA
Casey S Greene
148Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania
149Childhood Cancer Data Lab, Alex’s Lemonade Stand Foundation, Philadelphia, Pennsylvania, USA
Predrag Radivojac
150Khoury College of Computer Sciences, Northeastern University, Boston, MA, USA
Iddo Friedberg
1Veterinary Microbiology and Preventive Medicine, Iowa State University
2Program in Bioinformatics and Computational Biology, Iowa State University, Ames, IA, USA
- Supplementary files[supplements/653105_file02.pdf]
Posted May 29, 2019.
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
Naihui Zhou, Yuxiang Jiang, Timothy R Bergquist, Alexandra J Lee, Balint Z Kacsoh, Alex W Crocker, Kimberley A Lewis, George Georghiou, Huy N Nguyen, Md Nafiz Hamid, Larry Davis, Tunca Dogan, Volkan Atalay, Ahmet S Rifaioglu, Alperen Dalkiran, Rengul Cetin-Atalay, Chengxin Zhang, Rebecca L Hurto, Peter L Freddolino, Yang Zhang, Prajwal Bhat, Fran Supek, José M Fernández, Branislava Gemovic, Vladimir R Perovic, Radoslav S Davidović, Neven Sumonja, Nevena Veljkovic, Ehsaneddin Asgari, Mohammad RK Mofrad, Giuseppe Profiti, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Florian Boecker, Indika Kahanda, Natalie Thurlby, Alice C McHardy, Alexandre Renaux, Rabie Saidi, Julian Gough, Alex A Freitas, Magdalena Antczak, Fabio Fabris, Mark N Wass, Jie Hou, Jianlin Cheng, Jie Hou, Zheng Wang, Alfonso E Romero, Alberto Paccanaro, Haixuan Yang, Tatyana Goldberg, Chenguang Zhao, Liisa Holm, Petri Törönen, Alan J Medlar, Elaine Zosa, Itamar Borukhov, Ilya Novikov, Angela Wilkins, Olivier Lichtarge, Po-Han Chi, Wei-Cheng Tseng, Michal Linial, Peter W Rose, Christophe Dessimoz, Vedrana Vidulin, Saso Dzeroski, Ian Sillitoe, Sayoni Das, Jonathan Gill Lees, David T Jones, Cen Wan, Domenico Cozzetto, Rui Fa, Mateo Torres, Alex Wiarwick Vesztrocy, Jose Manuel Rodriguez, Michael L Tress, Marco Frasca, Marco Notaro, Giuliano Grossi, Alessandro Petrini, Matteo Re, Giorgio Valentini, Marco Mesiti, Daniel B Roche, Jonas Reeb, David W Ritchie, Sabeur Aridhi, Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, Da Chen Emily Koo, Richard Bonneau, Vladimir Gligorijević, Meet Barot, Hai Fang, Stefano Toppo, Enrico Lavezzo, Marco Falda, Michele Berselli, Silvio CE Tosatto, Marco Carraro, Damiano Piovesan, Hafeez Ur Rehman, Qizhong Mao, Shanshan Zhang, Slobodan Vucetic, Gage S Black, Dane Jo, Dallas J Larsen, Ashton R Omdahl, Luke W Sagers, Erica Suh, Jonathan B Dayton, Liam J McGuffin, Danielle A Brackenridge, Patricia C Babbitt, Jeffrey M Yunes, Paolo Fontana, Feng Zhang, Shanfeng Zhu, Ronghui You, Zihan Zhang, Suyang Dai, Shuwei Yao, Weidong Tian, Renzhi Cao, Caleb Chandler, Miguel Amezola, Devon Johnson, Jia-Ming Chang, Wen-Hung Liao, Yi-Wei Liu, Stefano Pascarelli, Yotam Frank, Robert Hoehndorf, Maxat Kulmanov, Imane Boudellioua, Gianfranco Politano, Stefano Di Carlo, Alfredo Benso, Kai Hakala, Filip Ginter, Farrokh Mehryary, Suwisa Kaewphan, Jari Björne, Hans Moen, Martti E E Tolvanen, Tapio Salakoski, Daisuke Kihara, Aashish Jain, Tomislav Šmuc, Adrian Altenhoff, Asa Ben-Hur, Burkhard Rost, Steven E Brenner, Christine A Orengo, Constance J Jeffery, Giovanni Bosco, Deborah A Hogan, Maria J Martin, Claire O’Donovan, Sean D Mooney, Casey S Greene, Predrag Radivojac, Iddo Friedberg
bioRxiv 653105; doi: https://doi.org/10.1101/653105
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
Naihui Zhou, Yuxiang Jiang, Timothy R Bergquist, Alexandra J Lee, Balint Z Kacsoh, Alex W Crocker, Kimberley A Lewis, George Georghiou, Huy N Nguyen, Md Nafiz Hamid, Larry Davis, Tunca Dogan, Volkan Atalay, Ahmet S Rifaioglu, Alperen Dalkiran, Rengul Cetin-Atalay, Chengxin Zhang, Rebecca L Hurto, Peter L Freddolino, Yang Zhang, Prajwal Bhat, Fran Supek, José M Fernández, Branislava Gemovic, Vladimir R Perovic, Radoslav S Davidović, Neven Sumonja, Nevena Veljkovic, Ehsaneddin Asgari, Mohammad RK Mofrad, Giuseppe Profiti, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Florian Boecker, Indika Kahanda, Natalie Thurlby, Alice C McHardy, Alexandre Renaux, Rabie Saidi, Julian Gough, Alex A Freitas, Magdalena Antczak, Fabio Fabris, Mark N Wass, Jie Hou, Jianlin Cheng, Jie Hou, Zheng Wang, Alfonso E Romero, Alberto Paccanaro, Haixuan Yang, Tatyana Goldberg, Chenguang Zhao, Liisa Holm, Petri Törönen, Alan J Medlar, Elaine Zosa, Itamar Borukhov, Ilya Novikov, Angela Wilkins, Olivier Lichtarge, Po-Han Chi, Wei-Cheng Tseng, Michal Linial, Peter W Rose, Christophe Dessimoz, Vedrana Vidulin, Saso Dzeroski, Ian Sillitoe, Sayoni Das, Jonathan Gill Lees, David T Jones, Cen Wan, Domenico Cozzetto, Rui Fa, Mateo Torres, Alex Wiarwick Vesztrocy, Jose Manuel Rodriguez, Michael L Tress, Marco Frasca, Marco Notaro, Giuliano Grossi, Alessandro Petrini, Matteo Re, Giorgio Valentini, Marco Mesiti, Daniel B Roche, Jonas Reeb, David W Ritchie, Sabeur Aridhi, Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, Da Chen Emily Koo, Richard Bonneau, Vladimir Gligorijević, Meet Barot, Hai Fang, Stefano Toppo, Enrico Lavezzo, Marco Falda, Michele Berselli, Silvio CE Tosatto, Marco Carraro, Damiano Piovesan, Hafeez Ur Rehman, Qizhong Mao, Shanshan Zhang, Slobodan Vucetic, Gage S Black, Dane Jo, Dallas J Larsen, Ashton R Omdahl, Luke W Sagers, Erica Suh, Jonathan B Dayton, Liam J McGuffin, Danielle A Brackenridge, Patricia C Babbitt, Jeffrey M Yunes, Paolo Fontana, Feng Zhang, Shanfeng Zhu, Ronghui You, Zihan Zhang, Suyang Dai, Shuwei Yao, Weidong Tian, Renzhi Cao, Caleb Chandler, Miguel Amezola, Devon Johnson, Jia-Ming Chang, Wen-Hung Liao, Yi-Wei Liu, Stefano Pascarelli, Yotam Frank, Robert Hoehndorf, Maxat Kulmanov, Imane Boudellioua, Gianfranco Politano, Stefano Di Carlo, Alfredo Benso, Kai Hakala, Filip Ginter, Farrokh Mehryary, Suwisa Kaewphan, Jari Björne, Hans Moen, Martti E E Tolvanen, Tapio Salakoski, Daisuke Kihara, Aashish Jain, Tomislav Šmuc, Adrian Altenhoff, Asa Ben-Hur, Burkhard Rost, Steven E Brenner, Christine A Orengo, Constance J Jeffery, Giovanni Bosco, Deborah A Hogan, Maria J Martin, Claire O’Donovan, Sean D Mooney, Casey S Greene, Predrag Radivojac, Iddo Friedberg
bioRxiv 653105; doi: https://doi.org/10.1101/653105
Subject Area
Subject Areas
- Biochemistry (4779)
- Bioengineering (3319)
- Bioinformatics (14637)
- Biophysics (6620)
- Cancer Biology (5158)
- Cell Biology (7405)
- Clinical Trials (138)
- Developmental Biology (4343)
- Ecology (6864)
- Epidemiology (2057)
- Evolutionary Biology (9893)
- Genetics (7331)
- Genomics (9502)
- Immunology (4540)
- Microbiology (12644)
- Molecular Biology (4928)
- Neuroscience (28245)
- Paleontology (199)
- Pathology (803)
- Pharmacology and Toxicology (1384)
- Physiology (2014)
- Plant Biology (4482)
- Synthetic Biology (1295)
- Systems Biology (3907)
- Zoology (722)