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Phenotypic plasticity as an important mechanism of cave colonization and adaptation in Astyanax cavefish

Helena Bilandžija, Breanna Hollifield, Mireille Steck, Guanliang Meng, Mandy Ng, Andrew D. Koch, Romana Gračan, Helena Ćetković, Megan L. Porter, Kenneth J. Renner, William R. Jeffery
doi: https://doi.org/10.1101/657460
Helena Bilandžija
1Department of Biology, University of Maryland, College Park, MD 20742 USA
2Department of Molecular Biology, Ruđer Bošković Institute, Zagreb 10000, Croatia
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Breanna Hollifield
1Department of Biology, University of Maryland, College Park, MD 20742 USA
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Mireille Steck
3Department of Biology, University of Hawai’i at Mānoa, Honolulu, HI 96822 USA
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Guanliang Meng
4BGI-Shenzhen, Shenzhen 518083, China
5China National GeneBank, BGI-Shenzhen, Shenzhen 518120, China
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Mandy Ng
1Department of Biology, University of Maryland, College Park, MD 20742 USA
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Andrew D. Koch
6Department of Biology, University of South Dakota, Vermillion SD 57069 USA
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Romana Gračan
7Department of Biology, Faculty of Science, University of Zagreb, 10000 Zagreb, Croatia
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Helena Ćetković
2Department of Molecular Biology, Ruđer Bošković Institute, Zagreb 10000, Croatia
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Megan L. Porter
3Department of Biology, University of Hawai’i at Mānoa, Honolulu, HI 96822 USA
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Kenneth J. Renner
6Department of Biology, University of South Dakota, Vermillion SD 57069 USA
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William R. Jeffery
1Department of Biology, University of Maryland, College Park, MD 20742 USA
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  • For correspondence: jeffery@umd.edu
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ABSTRACT

Subterranean habitats offer excellent opportunities to understand how adaptive phenotypes originate in changing environments. Cave dwelling animals show a suite of specialized traits associated with survival in a highly specialized dark environment. A widely accepted model for the evolution of cave animals posits cave colonization by surface dwelling ancestors followed by the acquisition of adaptive traits by standing genetic variation or new mutations over many generations. However, the speed of cave adaptation in some species is difficult to reconcile with this conventional viewpoint, suggesting the importance of alternative mechanisms operating over shorter timescales. To address these mechanisms, we exposed Astyanax mexicanus surface fish (SF) to completely dark (D/D) conditions during early development and compared them to siblings placed on a standard photoperiod (L/D). We identified multiple traits that were altered in D/D SF compared to L/D SF adults raised in complete darkness for up to 2 years. On a transcriptome level, these changes included differences in the expression of 356 genes related to sensory systems, endocrine signaling, circadian rhythms, the blood, and numerous metabolic changes, especially in lipids. On a phenotypic level, we found alterations in eye anatomy, pigmentation, metabolic rates, starvation resistance, hormone levels, and neurotransmitter levels. Remarkably, most of these alterations are associated with known adaptations to the cave environment that change in the direction of the cavefish phenotype. Contrary to the widely accepted view that cave-related traits result from long-term genetic processes, our results indicate that some traits can appear within a single generation by phenotypic plasticity. We also show that plasticity is a developmental and evolvable trait and that the initial plastic responses are random in terms of their adaptive outcome but may determine the subsequent course of adaptive evolution. Our study suggests that phenotypic plasticity may significantly contribute to the rapid evolution of cave-related traits providing a foundation for genetic assimilation in colonization of A. mexicanus to dark cave environments.

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Posted June 04, 2019.
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Phenotypic plasticity as an important mechanism of cave colonization and adaptation in Astyanax cavefish
Helena Bilandžija, Breanna Hollifield, Mireille Steck, Guanliang Meng, Mandy Ng, Andrew D. Koch, Romana Gračan, Helena Ćetković, Megan L. Porter, Kenneth J. Renner, William R. Jeffery
bioRxiv 657460; doi: https://doi.org/10.1101/657460
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Phenotypic plasticity as an important mechanism of cave colonization and adaptation in Astyanax cavefish
Helena Bilandžija, Breanna Hollifield, Mireille Steck, Guanliang Meng, Mandy Ng, Andrew D. Koch, Romana Gračan, Helena Ćetković, Megan L. Porter, Kenneth J. Renner, William R. Jeffery
bioRxiv 657460; doi: https://doi.org/10.1101/657460

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