Revealing microbial assemblage structure in the human gut microbiome using latent Dirichlet allocation

Shion Hosoda; Suguru Nishijima; Tsukasa Fukunaga; Masahira Hattori; Michiaki Hamada

doi:10.1101/664219

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Revealing microbial assemblage structure in the human gut microbiome using latent Dirichlet allocation

View ORCID ProfileShion Hosoda, View ORCID ProfileSuguru Nishijima, View ORCID ProfileTsukasa Fukunaga, Masahira Hattori, View ORCID ProfileMichiaki Hamada

doi: https://doi.org/10.1101/664219

Shion Hosoda

1Graduate School of Advanced Science and Engineering, Waseda University

2Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), National Institute of Advanced Industrial Science and Technology (AIST)

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ORCID record for Shion Hosoda

Suguru Nishijima

1Graduate School of Advanced Science and Engineering, Waseda University

2Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), National Institute of Advanced Industrial Science and Technology (AIST)

3Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo

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Tsukasa Fukunaga

1Graduate School of Advanced Science and Engineering, Waseda University

4Department of Computer Science, Graduate School of Information Science and Engineering, The University of Tokyo

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Masahira Hattori

1Graduate School of Advanced Science and Engineering, Waseda University

3Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo

5RIKEN Center for Integrative Medical Sciences

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Michiaki Hamada

1Graduate School of Advanced Science and Engineering, Waseda University

2Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL), National Institute of Advanced Industrial Science and Technology (AIST)

6Artificial Intelligence Research Center (AIRC), National Institute of Advanced Industrial Science and Technology (AIST)

7Graduate School of Medicine, Nippon Medical School

8Center for Data Science, Waseda University

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ORCID record for Michiaki Hamada
For correspondence: mhamada@waseda.jp

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Posted June 12, 2019.

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Revealing microbial assemblage structure in the human gut microbiome using latent Dirichlet allocation

Shion Hosoda, Suguru Nishijima, Tsukasa Fukunaga, Masahira Hattori, Michiaki Hamada

bioRxiv 664219; doi: https://doi.org/10.1101/664219

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Revealing microbial assemblage structure in the human gut microbiome using latent Dirichlet allocation

Shion Hosoda, Suguru Nishijima, Tsukasa Fukunaga, Masahira Hattori, Michiaki Hamada

bioRxiv 664219; doi: https://doi.org/10.1101/664219

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