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An improved pig reference genome sequence to enable pig genetics and genomics research
Amanda Warr, Nabeel Affara, Bronwen Aken, Hamid Beiki, Derek M Bickhart, Konstantinos Billis, William Chow, Lel Eory, Heather A Finlayson, Paul Flicek, Carlos G Girón, Darren K Griffin, Richard Hall, Gregory Hannum, Thibaut Hourlier, Kerstin Howe, David A Hume, Osagie Izuogu, Kristi Kim, Sergey Koren, Haibo Liu, Nancy Manchanda, Fergal J Martin, Dan J Nonneman, Rebecca E O’Connor, Adam M Phillippy, Gary A. Rohrer, Benjamin D. Rosen, Laurie A Rund, Carole A Sargent, Lawrence B Schook, Steven G. Schroeder, Ariel S Schwartz, Benjamin M Skinner, Richard Talbot, Elisabeth Tseng, Christopher K Tuggle, Mick Watson, Timothy P L Smith, View ORCID ProfileAlan L Archibald
doi: https://doi.org/10.1101/668921
Amanda Warr
1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh EH25 9RG, U.K.
Nabeel Affara
2Department of Pathology, University of Cambridge, Cambridge CB2 1QP, U.K.
Bronwen Aken
3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.
Hamid Beiki
4Department of Animal Science, Iowa State University, Ames, Iowa, U.S.A.
Derek M Bickhart
5Dairy Forage Research Center, USDA-ARS, Madison, Wisconsin, U.S.A.
Konstantinos Billis
3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.
William Chow
6Wellcome Sanger Institute, Cambridge, CB10 1SA, U.K.
Lel Eory
1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh EH25 9RG, U.K.
Heather A Finlayson
1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh EH25 9RG, U.K.
Paul Flicek
3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.
Carlos G Girón
3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.
Darren K Griffin
7School of Biosciences, University of Kent, Canterbury CT2 7AF, U.K.
Richard Hall
8Pacific Biosciences, Menlo Park, California, U.S.A.
Gregory Hannum
9Denovium Inc., San Diego, California, U.S.A.
Thibaut Hourlier
3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.
Kerstin Howe
6Wellcome Sanger Institute, Cambridge, CB10 1SA, U.K.
David A Hume
1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh EH25 9RG, U.K.
Osagie Izuogu
3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.
Kristi Kim
8Pacific Biosciences, Menlo Park, California, U.S.A.
Sergey Koren
10Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, Maryland, U.S.A.
Haibo Liu
11Department of Animal Science, Iowa State University, Ames, Iowa, U.S.A.
Nancy Manchanda
12Bioinformatics and Computational Biology Program, Iowa State University, Ames, Iowa, U.S.A.
Fergal J Martin
3European Molecular Biology Laboratory, European Bioinformatics Institute, Hinxton, CB10 1SD, U.K.
Dan J Nonneman
13USDA-ARS U.S. Meat Animal Research Center, Clay Center, Nebraska 68933, U.S.A.
Rebecca E O’Connor
7School of Biosciences, University of Kent, Canterbury CT2 7AF, U.K.
Adam M Phillippy
10Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, Bethesda, Maryland, U.S.A.
Gary A. Rohrer
13USDA-ARS U.S. Meat Animal Research Center, Clay Center, Nebraska 68933, U.S.A.
Benjamin D. Rosen
14Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, Maryland, U.S.A.
Laurie A Rund
15Department of Animal Sciences, University of Illinois, Urbana, Illinois, U.S.A.
Carole A Sargent
2Department of Pathology, University of Cambridge, Cambridge CB2 1QP, U.K.
Lawrence B Schook
15Department of Animal Sciences, University of Illinois, Urbana, Illinois, U.S.A.
Steven G. Schroeder
14Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, Maryland, U.S.A.
Ariel S Schwartz
9Denovium Inc., San Diego, California, U.S.A.
Benjamin M Skinner
2Department of Pathology, University of Cambridge, Cambridge CB2 1QP, U.K.
Richard Talbot
16Edinburgh Genomics, University of Edinburgh, Edinburgh EH9 3FL, U.K.
Elisabeth Tseng
8Pacific Biosciences, Menlo Park, California, U.S.A.
Christopher K Tuggle
11Department of Animal Science, Iowa State University, Ames, Iowa, U.S.A.
12Bioinformatics and Computational Biology Program, Iowa State University, Ames, Iowa, U.S.A.
Mick Watson
1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh EH25 9RG, U.K.
Timothy P L Smith
13USDA-ARS U.S. Meat Animal Research Center, Clay Center, Nebraska 68933, U.S.A.
Alan L Archibald
1The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh EH25 9RG, U.K.
- On-line methods and Supplementary information[supplements/668921_file02.pdf]
Posted June 13, 2019.
An improved pig reference genome sequence to enable pig genetics and genomics research
Amanda Warr, Nabeel Affara, Bronwen Aken, Hamid Beiki, Derek M Bickhart, Konstantinos Billis, William Chow, Lel Eory, Heather A Finlayson, Paul Flicek, Carlos G Girón, Darren K Griffin, Richard Hall, Gregory Hannum, Thibaut Hourlier, Kerstin Howe, David A Hume, Osagie Izuogu, Kristi Kim, Sergey Koren, Haibo Liu, Nancy Manchanda, Fergal J Martin, Dan J Nonneman, Rebecca E O’Connor, Adam M Phillippy, Gary A. Rohrer, Benjamin D. Rosen, Laurie A Rund, Carole A Sargent, Lawrence B Schook, Steven G. Schroeder, Ariel S Schwartz, Benjamin M Skinner, Richard Talbot, Elisabeth Tseng, Christopher K Tuggle, Mick Watson, Timothy P L Smith, Alan L Archibald
bioRxiv 668921; doi: https://doi.org/10.1101/668921
An improved pig reference genome sequence to enable pig genetics and genomics research
Amanda Warr, Nabeel Affara, Bronwen Aken, Hamid Beiki, Derek M Bickhart, Konstantinos Billis, William Chow, Lel Eory, Heather A Finlayson, Paul Flicek, Carlos G Girón, Darren K Griffin, Richard Hall, Gregory Hannum, Thibaut Hourlier, Kerstin Howe, David A Hume, Osagie Izuogu, Kristi Kim, Sergey Koren, Haibo Liu, Nancy Manchanda, Fergal J Martin, Dan J Nonneman, Rebecca E O’Connor, Adam M Phillippy, Gary A. Rohrer, Benjamin D. Rosen, Laurie A Rund, Carole A Sargent, Lawrence B Schook, Steven G. Schroeder, Ariel S Schwartz, Benjamin M Skinner, Richard Talbot, Elisabeth Tseng, Christopher K Tuggle, Mick Watson, Timothy P L Smith, Alan L Archibald
bioRxiv 668921; doi: https://doi.org/10.1101/668921
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