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3D observation of large-scale subcellular dynamics in vivo at the millisecond scale

Jiamin Wu, Zhi Lu, Hui Qiao, Xu Zhang, Karl Zhanghao, Hao Xie, Tao Yan, Guoxun Zhang, Xiaoxu Li, Zheng Jiang, Xing Lin, Lu Fang, Bing Zhou, Jingtao Fan, Peng Xi, Qionghai Dai
doi: https://doi.org/10.1101/672584
Jiamin Wu
1Department of Automation, Tsinghua University, Beijing, 100084, China
2Beijing Key Laboratory of Multi-dimension & Multi-scale Computational Photography (MMCP), School of Software, Tsinghua University, Beijing 100084, China
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Zhi Lu
1Department of Automation, Tsinghua University, Beijing, 100084, China
2Beijing Key Laboratory of Multi-dimension & Multi-scale Computational Photography (MMCP), School of Software, Tsinghua University, Beijing 100084, China
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Hui Qiao
1Department of Automation, Tsinghua University, Beijing, 100084, China
2Beijing Key Laboratory of Multi-dimension & Multi-scale Computational Photography (MMCP), School of Software, Tsinghua University, Beijing 100084, China
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Xu Zhang
1Department of Automation, Tsinghua University, Beijing, 100084, China
2Beijing Key Laboratory of Multi-dimension & Multi-scale Computational Photography (MMCP), School of Software, Tsinghua University, Beijing 100084, China
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Karl Zhanghao
3Department of Biomedical Engineering, College of Engineering, Peking University, Beijing 100871, China
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Hao Xie
1Department of Automation, Tsinghua University, Beijing, 100084, China
2Beijing Key Laboratory of Multi-dimension & Multi-scale Computational Photography (MMCP), School of Software, Tsinghua University, Beijing 100084, China
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Tao Yan
1Department of Automation, Tsinghua University, Beijing, 100084, China
2Beijing Key Laboratory of Multi-dimension & Multi-scale Computational Photography (MMCP), School of Software, Tsinghua University, Beijing 100084, China
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Guoxun Zhang
1Department of Automation, Tsinghua University, Beijing, 100084, China
2Beijing Key Laboratory of Multi-dimension & Multi-scale Computational Photography (MMCP), School of Software, Tsinghua University, Beijing 100084, China
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Xiaoxu Li
1Department of Automation, Tsinghua University, Beijing, 100084, China
2Beijing Key Laboratory of Multi-dimension & Multi-scale Computational Photography (MMCP), School of Software, Tsinghua University, Beijing 100084, China
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Zheng Jiang
6State Key Laboratory of Membrane Biology, Tsinghua-Peking Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China
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Xing Lin
1Department of Automation, Tsinghua University, Beijing, 100084, China
4Electrical and Computer Engineering Department, University of California, Los Angeles, CA 90095, USA
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Lu Fang
5Tsinghua - Berkeley Shenzhen Institute (TBSI), Tsinghua University, Shenzhen 100084, China
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Bing Zhou
7Advanced Innovation Center for Big Data-Based Precision Medicine, School of Biological Science and Medical Engineering, Beihang University, Beijing 100191, China
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Jingtao Fan
1Department of Automation, Tsinghua University, Beijing, 100084, China
2Beijing Key Laboratory of Multi-dimension & Multi-scale Computational Photography (MMCP), School of Software, Tsinghua University, Beijing 100084, China
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  • For correspondence: qhdai@tsinghua.edu.cn xipeng@pku.edu.cn fanjingtao@mail.tsinghua.edu.cn
Peng Xi
3Department of Biomedical Engineering, College of Engineering, Peking University, Beijing 100871, China
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  • For correspondence: qhdai@tsinghua.edu.cn xipeng@pku.edu.cn fanjingtao@mail.tsinghua.edu.cn
Qionghai Dai
1Department of Automation, Tsinghua University, Beijing, 100084, China
2Beijing Key Laboratory of Multi-dimension & Multi-scale Computational Photography (MMCP), School of Software, Tsinghua University, Beijing 100084, China
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  • For correspondence: qhdai@tsinghua.edu.cn xipeng@pku.edu.cn fanjingtao@mail.tsinghua.edu.cn
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Abstract

Observing large-scale three-dimensional (3D) subcellular dynamics in vivo at high spatiotemporal resolution has long been a pursuit for biology. However, both the signal-to-noise ratio and resolution degradation in multicellular organisms pose great challenges. Here, we propose a method, termed Digital Adaptive Optics Scanning Lightfield Mutual Iterative Tomography (DAOSLIMIT), featuring both 3D incoherent synthetic aperture and tiled wavefront correction in post-processing. We achieve aberration-free fluorescence imaging in vivo over a 150 × 150 × 16 μm3 field-of-view with the spatiotemporal resolution up to 250 nm laterally and 320 nm axially at 100 Hz, corresponding to a huge data throughput of over 15 Giga-voxels per second. Various fast subcellular processes are observed, including mitochondrial dynamics in cultured neurons, membrane dynamics in zebrafish embryos, and calcium propagation in cardiac cells, human cerebral organoids, and Drosophila larval neurons, enabling simultaneous in vivo studies of morphological and functional dynamics in 3D.

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Posted June 18, 2019.
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3D observation of large-scale subcellular dynamics in vivo at the millisecond scale
Jiamin Wu, Zhi Lu, Hui Qiao, Xu Zhang, Karl Zhanghao, Hao Xie, Tao Yan, Guoxun Zhang, Xiaoxu Li, Zheng Jiang, Xing Lin, Lu Fang, Bing Zhou, Jingtao Fan, Peng Xi, Qionghai Dai
bioRxiv 672584; doi: https://doi.org/10.1101/672584
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3D observation of large-scale subcellular dynamics in vivo at the millisecond scale
Jiamin Wu, Zhi Lu, Hui Qiao, Xu Zhang, Karl Zhanghao, Hao Xie, Tao Yan, Guoxun Zhang, Xiaoxu Li, Zheng Jiang, Xing Lin, Lu Fang, Bing Zhou, Jingtao Fan, Peng Xi, Qionghai Dai
bioRxiv 672584; doi: https://doi.org/10.1101/672584

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