New Results
Brain-wide single neuron reconstruction reveals morphological diversity in molecularly defined striatal, thalamic, cortical and claustral neuron types
View ORCID ProfileHanchuan Peng, Peng Xie, View ORCID ProfileLijuan Liu, Xiuli Kuang, Yimin Wang, Lei Qu, Hui Gong, Shengdian Jiang, Anan Li, Zongcai Ruan, Liya Ding, Chao Chen, Mengya Chen, Tanya L. Daigle, Zhangcan Ding, Yanjun Duan, Aaron Feiner, Ping He, Chris Hill, Karla E. Hirokawa, Guodong Hong, Lei Huang, Sara Kebede, Hsien-Chi Kuo, Rachael Larsen, Phil Lesnar, Longfei Li, Qi Li, Xiangning Li, Yaoyao Li, Yuanyuan Li, An Liu, Donghuan Lu, Stephanie Mok, Lydia Ng, Thuc Nghi Nguyen, Qiang Ouyang, Jintao Pan, Elise Shen, Yuanyuan Song, Susan M. Sunkin, Bosiljka Tasic, Matthew B. Veldman, Wayne Wakeman, Wan Wan, Peng Wang, Quanxin Wang, Tao Wang, Yaping Wang, Feng Xiong, Wei Xiong, Wenjie Xu, Zizhen Yao, Min Ye, Lulu Yin, Yang Yu, Jia Yuan, Jing Yuan, Zhixi Yun, Shaoqun Zeng, Shichen Zhang, Sujun Zhao, Zijun Zhao, Zhi Zhou, Z. Josh Huang, Luke Esposito, Michael J. Hawrylycz, Staci A. Sorensen, X. William Yang, Yefeng Zheng, Zhongze Gu, Wei Xie, Christof Koch, Qingming Luo, Julie A. Harris, Yun Wang, View ORCID ProfileHongkui Zeng
doi: https://doi.org/10.1101/675280
Hanchuan Peng
1Allen Institute for Brain Science, Seattle, WA 98109, USA
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Peng Xie
1Allen Institute for Brain Science, Seattle, WA 98109, USA
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Lijuan Liu
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Xiuli Kuang
3School of Optometry and Ophthalmology, Wenzhou Medical University, Wenzhou, Zhejiang, China
Yimin Wang
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
4School of Computer Engineering and Science, Shanghai University, Shanghai, China
Lei Qu
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
5Key Laboratory of Intelligent Computation & Signal Processing, Ministry of Education, Anhui University, Hefei, Anhui, China
Hui Gong
6Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology, Wuhan, Hubei, China
7HUST-Suzhou Institute for Brainsmatics, JITRI Institute for Brainsmatics, Suzhou, Jiangsu, China
Shengdian Jiang
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Anan Li
6Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology, Wuhan, Hubei, China
7HUST-Suzhou Institute for Brainsmatics, JITRI Institute for Brainsmatics, Suzhou, Jiangsu, China
Zongcai Ruan
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Liya Ding
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Chao Chen
3School of Optometry and Ophthalmology, Wenzhou Medical University, Wenzhou, Zhejiang, China
Mengya Chen
4School of Computer Engineering and Science, Shanghai University, Shanghai, China
Tanya L. Daigle
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Zhangcan Ding
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Yanjun Duan
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Aaron Feiner
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Ping He
4School of Computer Engineering and Science, Shanghai University, Shanghai, China
Chris Hill
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Karla E. Hirokawa
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Guodong Hong
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Lei Huang
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Sara Kebede
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Hsien-Chi Kuo
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Rachael Larsen
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Phil Lesnar
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Longfei Li
5Key Laboratory of Intelligent Computation & Signal Processing, Ministry of Education, Anhui University, Hefei, Anhui, China
Qi Li
4School of Computer Engineering and Science, Shanghai University, Shanghai, China
Xiangning Li
6Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology, Wuhan, Hubei, China
7HUST-Suzhou Institute for Brainsmatics, JITRI Institute for Brainsmatics, Suzhou, Jiangsu, China
Yaoyao Li
3School of Optometry and Ophthalmology, Wenzhou Medical University, Wenzhou, Zhejiang, China
Yuanyuan Li
5Key Laboratory of Intelligent Computation & Signal Processing, Ministry of Education, Anhui University, Hefei, Anhui, China
An Liu
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Donghuan Lu
8Tencent Jarvis Lab, Shenzhen, Guangdong, China
Stephanie Mok
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Lydia Ng
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Thuc Nghi Nguyen
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Qiang Ouyang
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Jintao Pan
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Elise Shen
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Yuanyuan Song
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Susan M. Sunkin
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Bosiljka Tasic
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Matthew B. Veldman
9Center for Neurobehavioral Genetics, Jane and Terry Semel Institute for Neuroscience and Human Behavior; Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
Wayne Wakeman
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Wan Wan
5Key Laboratory of Intelligent Computation & Signal Processing, Ministry of Education, Anhui University, Hefei, Anhui, China
Peng Wang
4School of Computer Engineering and Science, Shanghai University, Shanghai, China
Quanxin Wang
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Tao Wang
5Key Laboratory of Intelligent Computation & Signal Processing, Ministry of Education, Anhui University, Hefei, Anhui, China
Yaping Wang
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Feng Xiong
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Wei Xiong
3School of Optometry and Ophthalmology, Wenzhou Medical University, Wenzhou, Zhejiang, China
Wenjie Xu
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Zizhen Yao
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Min Ye
3School of Optometry and Ophthalmology, Wenzhou Medical University, Wenzhou, Zhejiang, China
Lulu Yin
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Yang Yu
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Jia Yuan
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Jing Yuan
6Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology, Wuhan, Hubei, China
7HUST-Suzhou Institute for Brainsmatics, JITRI Institute for Brainsmatics, Suzhou, Jiangsu, China
Zhixi Yun
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Shaoqun Zeng
6Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology, Wuhan, Hubei, China
Shichen Zhang
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Sujun Zhao
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Zijun Zhao
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Zhi Zhou
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Z. Josh Huang
10Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
Luke Esposito
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Michael J. Hawrylycz
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Staci A. Sorensen
1Allen Institute for Brain Science, Seattle, WA 98109, USA
X. William Yang
9Center for Neurobehavioral Genetics, Jane and Terry Semel Institute for Neuroscience and Human Behavior; Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
Yefeng Zheng
8Tencent Jarvis Lab, Shenzhen, Guangdong, China
Zhongze Gu
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Wei Xie
2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
Christof Koch
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Qingming Luo
6Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology, Wuhan, Hubei, China
11School of Biomedical Engineering, Hainan University, Haikou, Hainan, China
Julie A. Harris
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Yun Wang
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Hongkui Zeng
1Allen Institute for Brain Science, Seattle, WA 98109, USA
Article Information
History
- September 27, 2020.
Article Versions
- Version 1 (June 20, 2019 - 09:22).
- Version 2 (September 27, 2020 - 05:13).
- You are viewing Version 3, the most recent version of this article.
Copyright
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
Author Information
- Hanchuan Peng1,2,*,
- Peng Xie1,2,#,
- Lijuan Liu2,#,
- Xiuli Kuang3,
- Yimin Wang2,4,
- Lei Qu2,5,
- Hui Gong6,7,
- Shengdian Jiang2,
- Anan Li6,7,
- Zongcai Ruan2,
- Liya Ding2,
- Chao Chen3,
- Mengya Chen4,
- Tanya L. Daigle1,
- Zhangcan Ding2,
- Yanjun Duan2,
- Aaron Feiner1,
- Ping He4,
- Chris Hill1,
- Karla E. Hirokawa1,
- Guodong Hong2,
- Lei Huang2,
- Sara Kebede1,
- Hsien-Chi Kuo1,
- Rachael Larsen1,
- Phil Lesnar1,
- Longfei Li5,
- Qi Li4,
- Xiangning Li6,7,
- Yaoyao Li3,
- Yuanyuan Li5,
- An Liu2,
- Donghuan Lu8,
- Stephanie Mok1,
- Lydia Ng1,
- Thuc Nghi Nguyen1,
- Qiang Ouyang2,
- Jintao Pan2,
- Elise Shen1,
- Yuanyuan Song2,
- Susan M. Sunkin1,
- Bosiljka Tasic1,
- Matthew B. Veldman9,
- Wayne Wakeman1,
- Wan Wan5,
- Peng Wang4,
- Quanxin Wang1,
- Tao Wang5,
- Yaping Wang2,
- Feng Xiong2,
- Wei Xiong3,
- Wenjie Xu1,
- Zizhen Yao1,
- Min Ye3,
- Lulu Yin2,
- Yang Yu1,
- Jia Yuan2,
- Jing Yuan6,7,
- Zhixi Yun2,
- Shaoqun Zeng6,
- Shichen Zhang2,
- Sujun Zhao2,
- Zijun Zhao2,
- Zhi Zhou1,
- Z. Josh Huang10,
- Luke Esposito1,
- Michael J. Hawrylycz1,
- Staci A. Sorensen1,
- X. William Yang9,
- Yefeng Zheng8,
- Zhongze Gu2,
- Wei Xie2,
- Christof Koch1,
- Qingming Luo6,11,
- Julie A. Harris1,
- Yun Wang1 and
- Hongkui Zeng1,*
- 1Allen Institute for Brain Science, Seattle, WA 98109, USA
- 2SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu, China
- 3School of Optometry and Ophthalmology, Wenzhou Medical University, Wenzhou, Zhejiang, China
- 4School of Computer Engineering and Science, Shanghai University, Shanghai, China
- 5Key Laboratory of Intelligent Computation & Signal Processing, Ministry of Education, Anhui University, Hefei, Anhui, China
- 6Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, MoE Key Laboratory for Biomedical Photonics, Huazhong University of Science and Technology, Wuhan, Hubei, China
- 7HUST-Suzhou Institute for Brainsmatics, JITRI Institute for Brainsmatics, Suzhou, Jiangsu, China
- 8Tencent Jarvis Lab, Shenzhen, Guangdong, China
- 9Center for Neurobehavioral Genetics, Jane and Terry Semel Institute for Neuroscience and Human Behavior; Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
- 10Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA
- 11School of Biomedical Engineering, Hainan University, Haikou, Hainan, China
- ↵*Correspondence: Hanchuan Peng (h{at}braintell.org) or Hongkui Zeng (hongkuiz{at}alleninstitute.org)
↵# Equal contribution
Posted September 27, 2020.
Brain-wide single neuron reconstruction reveals morphological diversity in molecularly defined striatal, thalamic, cortical and claustral neuron types
Hanchuan Peng, Peng Xie, Lijuan Liu, Xiuli Kuang, Yimin Wang, Lei Qu, Hui Gong, Shengdian Jiang, Anan Li, Zongcai Ruan, Liya Ding, Chao Chen, Mengya Chen, Tanya L. Daigle, Zhangcan Ding, Yanjun Duan, Aaron Feiner, Ping He, Chris Hill, Karla E. Hirokawa, Guodong Hong, Lei Huang, Sara Kebede, Hsien-Chi Kuo, Rachael Larsen, Phil Lesnar, Longfei Li, Qi Li, Xiangning Li, Yaoyao Li, Yuanyuan Li, An Liu, Donghuan Lu, Stephanie Mok, Lydia Ng, Thuc Nghi Nguyen, Qiang Ouyang, Jintao Pan, Elise Shen, Yuanyuan Song, Susan M. Sunkin, Bosiljka Tasic, Matthew B. Veldman, Wayne Wakeman, Wan Wan, Peng Wang, Quanxin Wang, Tao Wang, Yaping Wang, Feng Xiong, Wei Xiong, Wenjie Xu, Zizhen Yao, Min Ye, Lulu Yin, Yang Yu, Jia Yuan, Jing Yuan, Zhixi Yun, Shaoqun Zeng, Shichen Zhang, Sujun Zhao, Zijun Zhao, Zhi Zhou, Z. Josh Huang, Luke Esposito, Michael J. Hawrylycz, Staci A. Sorensen, X. William Yang, Yefeng Zheng, Zhongze Gu, Wei Xie, Christof Koch, Qingming Luo, Julie A. Harris, Yun Wang, Hongkui Zeng
bioRxiv 675280; doi: https://doi.org/10.1101/675280
Brain-wide single neuron reconstruction reveals morphological diversity in molecularly defined striatal, thalamic, cortical and claustral neuron types
Hanchuan Peng, Peng Xie, Lijuan Liu, Xiuli Kuang, Yimin Wang, Lei Qu, Hui Gong, Shengdian Jiang, Anan Li, Zongcai Ruan, Liya Ding, Chao Chen, Mengya Chen, Tanya L. Daigle, Zhangcan Ding, Yanjun Duan, Aaron Feiner, Ping He, Chris Hill, Karla E. Hirokawa, Guodong Hong, Lei Huang, Sara Kebede, Hsien-Chi Kuo, Rachael Larsen, Phil Lesnar, Longfei Li, Qi Li, Xiangning Li, Yaoyao Li, Yuanyuan Li, An Liu, Donghuan Lu, Stephanie Mok, Lydia Ng, Thuc Nghi Nguyen, Qiang Ouyang, Jintao Pan, Elise Shen, Yuanyuan Song, Susan M. Sunkin, Bosiljka Tasic, Matthew B. Veldman, Wayne Wakeman, Wan Wan, Peng Wang, Quanxin Wang, Tao Wang, Yaping Wang, Feng Xiong, Wei Xiong, Wenjie Xu, Zizhen Yao, Min Ye, Lulu Yin, Yang Yu, Jia Yuan, Jing Yuan, Zhixi Yun, Shaoqun Zeng, Shichen Zhang, Sujun Zhao, Zijun Zhao, Zhi Zhou, Z. Josh Huang, Luke Esposito, Michael J. Hawrylycz, Staci A. Sorensen, X. William Yang, Yefeng Zheng, Zhongze Gu, Wei Xie, Christof Koch, Qingming Luo, Julie A. Harris, Yun Wang, Hongkui Zeng
bioRxiv 675280; doi: https://doi.org/10.1101/675280
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