Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing

Lorena de la Fuente, Ángeles Arzalluz-Luque, Manuel Tardáguila, Manuel Tardáguila, Héctor del Risco, Cristina Martí, Sonia Tarazona, Pedro Salguero, Raymond Scott, Ana Alastrue-Agudo, Pablo Bonilla, Jeremy Newman, Lauren McIntyre, Victoria Moreno-Manzano, Ana Conesa
doi: https://doi.org/10.1101/690743
Lorena de la Fuente
1Genomics of Gene Expression Laboratory, Prince Felipe Research Center, Valencia, Spain
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Ángeles Arzalluz-Luque
2Department of Statistics and Operational Research, Polytechnical University of Valencia, Valencia, Spain
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Manuel Tardáguila
3Department of Microbiology and Cell Science, Institute for Food and Agricultural Sciences, University of Florida, Gainesville, Florida, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Manuel Tardáguila
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Héctor del Risco
3Department of Microbiology and Cell Science, Institute for Food and Agricultural Sciences, University of Florida, Gainesville, Florida, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Cristina Martí
1Genomics of Gene Expression Laboratory, Prince Felipe Research Center, Valencia, Spain
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Sonia Tarazona
2Department of Statistics and Operational Research, Polytechnical University of Valencia, Valencia, Spain
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Pedro Salguero
1Genomics of Gene Expression Laboratory, Prince Felipe Research Center, Valencia, Spain
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Raymond Scott
3Department of Microbiology and Cell Science, Institute for Food and Agricultural Sciences, University of Florida, Gainesville, Florida, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Ana Alastrue-Agudo
4Neural Regeneration Laboratory, Prince Felipe Research Center, Valencia, Spain
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Pablo Bonilla
4Neural Regeneration Laboratory, Prince Felipe Research Center, Valencia, Spain
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Jeremy Newman
5Genetics Institute, University of Florida, Gainesville, Florida, USA
6Department of Pathology, University of Florida, Gainesville, Florida, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Lauren McIntyre
5Genetics Institute, University of Florida, Gainesville, Florida, USA
7Department of Molecular Genetics and Microbiology, University of Florida, Gainesville, Florida, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Victoria Moreno-Manzano
4Neural Regeneration Laboratory, Prince Felipe Research Center, Valencia, Spain
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Ana Conesa
3Department of Microbiology and Cell Science, Institute for Food and Agricultural Sciences, University of Florida, Gainesville, Florida, USA
5Genetics Institute, University of Florida, Gainesville, Florida, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: aconesa@ufl.edu
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Data/Code
  • Preview PDF
Loading

Article Information

doi 
https://doi.org/10.1101/690743
History 
  • July 4, 2019.

Article Versions

  • Version 1 (July 3, 2019 - 14:56).
  • You are viewing Version 2, the most recent version of this article.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.

Author Information

  1. Lorena de la Fuente1,a,+,
  2. Ángeles Arzalluz-Luque2,
  3. Manuel Tardáguila3,a,§,
  4. Manuel Tardáguila,
  5. Héctor del Risco3,
  6. Cristina Martí1,
  7. Sonia Tarazona2,
  8. Pedro Salguero1,
  9. Raymond Scott3,
  10. Ana Alastrue-Agudo4,
  11. Pablo Bonilla4,
  12. Jeremy Newman5,6,
  13. Lauren McIntyre5,7,
  14. Victoria Moreno-Manzano4,b and
  15. Ana Conesa3,5,b,*
  1. 1Genomics of Gene Expression Laboratory, Prince Felipe Research Center, Valencia, Spain
  2. 2Department of Statistics and Operational Research, Polytechnical University of Valencia, Valencia, Spain
  3. 3Department of Microbiology and Cell Science, Institute for Food and Agricultural Sciences, University of Florida, Gainesville, Florida, USA
  4. 4Neural Regeneration Laboratory, Prince Felipe Research Center, Valencia, Spain
  5. 5Genetics Institute, University of Florida, Gainesville, Florida, USA
  6. 6Department of Pathology, University of Florida, Gainesville, Florida, USA
  7. 7Department of Molecular Genetics and Microbiology, University of Florida, Gainesville, Florida, USA
  1. ↵*Corresponding author: aconesa{at}ufl.edu
  1. ↵a These authors contributed equally to this work.

  • ↵+ Bioinformatics Unit, IIS Fundación Jiménez Díaz, Madrid, Spain

  • ↵§ Human Genetics Department, Wellcome Trust Sanger Institute, Hinxton (Cambridge), UK

Back to top
PreviousNext
Posted July 04, 2019.
Download PDF

Supplementary Material

Data/Code
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing
Lorena de la Fuente, Ángeles Arzalluz-Luque, Manuel Tardáguila, Manuel Tardáguila, Héctor del Risco, Cristina Martí, Sonia Tarazona, Pedro Salguero, Raymond Scott, Ana Alastrue-Agudo, Pablo Bonilla, Jeremy Newman, Lauren McIntyre, Victoria Moreno-Manzano, Ana Conesa
bioRxiv 690743; doi: https://doi.org/10.1101/690743
Digg logo Reddit logo Twitter logo CiteULike logo Facebook logo Google logo Mendeley logo
Citation Tools
tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing
Lorena de la Fuente, Ángeles Arzalluz-Luque, Manuel Tardáguila, Manuel Tardáguila, Héctor del Risco, Cristina Martí, Sonia Tarazona, Pedro Salguero, Raymond Scott, Ana Alastrue-Agudo, Pablo Bonilla, Jeremy Newman, Lauren McIntyre, Victoria Moreno-Manzano, Ana Conesa
bioRxiv 690743; doi: https://doi.org/10.1101/690743

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Bioinformatics
Subject Areas
All Articles
  • Animal Behavior and Cognition (2434)
  • Biochemistry (4796)
  • Bioengineering (3335)
  • Bioinformatics (14704)
  • Biophysics (6649)
  • Cancer Biology (5180)
  • Cell Biology (7439)
  • Clinical Trials (138)
  • Developmental Biology (4373)
  • Ecology (6890)
  • Epidemiology (2057)
  • Evolutionary Biology (9930)
  • Genetics (7351)
  • Genomics (9542)
  • Immunology (4570)
  • Microbiology (12700)
  • Molecular Biology (4954)
  • Neuroscience (28381)
  • Paleontology (199)
  • Pathology (809)
  • Pharmacology and Toxicology (1394)
  • Physiology (2025)
  • Plant Biology (4516)
  • Scientific Communication and Education (978)
  • Synthetic Biology (1302)
  • Systems Biology (3919)
  • Zoology (729)