Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

SILand: an R package for estimating the spatial influence of landscape

Florence Carpentier, Olivier Martin
doi: https://doi.org/10.1101/692566
Florence Carpentier
1UMR BIOGER, INRA, AgroParisTech, Université Paris-Saclay, 78850, Thiverval-Grignon, France
2MaIAGE, INRA, Université Paris-Saclay, 78350, Jouy-en-Josas, France
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: florence.carpentier@inra.fr
Olivier Martin
3BioSP, INRA, 84914, Avignon, France
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Preview PDF
Loading

Abstract

  1. The spatial distributions of species and populations are both influenced by local variables and by characteristics of surrounding landscapes. Understanding how a landscape spatially structures the frequency of a trait in a population, the abundance of a species or the species’ richness is difficult since it requires estimating the intensity and the spatial scale effects of the landscape variables.

  2. Here, we present ‘SILand’, an R package for analysing georeferenced point observations associated with landscape characteristics described in a Geographic Information System shapefile format. By modelling the effect of landscape variables using spatial influence functions, ‘SILand” simultaneously estimates the intensities and spatial scales of landscape variable effects. Different types of observations (continuous, discrete, proportion) are considered. Local, fixed and random effects are added.

  3. ‘SILand’ allows for testing the significance of local and landscape variables effects and for estimating the significant influence area of a landscape variable to create maps of their effects and to compare models by computing the AIC criteria.

  4. We illustrate the main steps of a landscape analysis with a case study about codling moth density in a landscape composed of organic and conventional orchards and vineyards to demonstrate the functionality of SILand.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
Back to top
PreviousNext
Posted July 04, 2019.
Download PDF
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
SILand: an R package for estimating the spatial influence of landscape
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
SILand: an R package for estimating the spatial influence of landscape
Florence Carpentier, Olivier Martin
bioRxiv 692566; doi: https://doi.org/10.1101/692566
Digg logo Reddit logo Twitter logo CiteULike logo Facebook logo Google logo Mendeley logo
Citation Tools
SILand: an R package for estimating the spatial influence of landscape
Florence Carpentier, Olivier Martin
bioRxiv 692566; doi: https://doi.org/10.1101/692566

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Ecology
Subject Areas
All Articles
  • Animal Behavior and Cognition (2238)
  • Biochemistry (4306)
  • Bioengineering (2963)
  • Bioinformatics (13492)
  • Biophysics (5966)
  • Cancer Biology (4640)
  • Cell Biology (6649)
  • Clinical Trials (138)
  • Developmental Biology (3942)
  • Ecology (6244)
  • Epidemiology (2053)
  • Evolutionary Biology (9191)
  • Genetics (6888)
  • Genomics (8810)
  • Immunology (3924)
  • Microbiology (11300)
  • Molecular Biology (4465)
  • Neuroscience (25657)
  • Paleontology (183)
  • Pathology (722)
  • Pharmacology and Toxicology (1212)
  • Physiology (1783)
  • Plant Biology (4005)
  • Scientific Communication and Education (893)
  • Synthetic Biology (1194)
  • Systems Biology (3631)
  • Zoology (654)