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Classification of hospital and urban wastewater resistome and microbiota over time and their relationship to the eco-exposome

Elena Buelow, Andreu Rico, Margaux Gaschet, José Lourenço, Sean P. Kennedy, Laure Wiest, Marie-Cecile Ploy, Christophe Dagot
doi: https://doi.org/10.1101/697433
Elena Buelow
1University Limoges, INSERM, CHU Limoges, RESINFIT, U1092, F-87000 Limoges, France
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  • For correspondence: [email protected]
Andreu Rico
2IMDEA Water Institute, Science and Technology Campus of the University of Alcalá, Avenida Punto Com 2, 28805, Alcalá de Henares, Madrid, Spain
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Margaux Gaschet
1University Limoges, INSERM, CHU Limoges, RESINFIT, U1092, F-87000 Limoges, France
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José Lourenço
3Department of Zoology, University of Oxford, Oxford, UK
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Sean P. Kennedy
4Biomics Pole, CITECH, Institut Pasteur, Paris 75015, France
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Laure Wiest
5Univ Lyon, CNRS, Université Claude Bernard Lyon, Institut des Sciences Analytiques, UMR 5280, 5 Rue de la Doua, F-69100, Villeurbanne, France
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Marie-Cecile Ploy
1University Limoges, INSERM, CHU Limoges, RESINFIT, U1092, F-87000 Limoges, France
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Christophe Dagot
1University Limoges, INSERM, CHU Limoges, RESINFIT, U1092, F-87000 Limoges, France
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Abstract

Wastewaters (WW) are important sources for the dissemination of antimicrobial resistance (AMR) into the environment. Hospital WW (HWW) contain higher loads of micro-pollutants and AMR markers than urban WW (UWW). Little is known about the long-term dynamics of H and U WW and the impact of their joined treatment on the general burden of AMR. Here, we characterized the resistome, microbiota and eco-exposome signature of 126 H and U WW samples treated separately for three years, and then mixed, over one year. Multi-variate analysis and machine learning revealed a robust signature for each WW with no significant variation over time before mixing, and once mixed, both WW closely resembled U signatures. We demonstrated a significant impact of pharmaceuticals and surfactants on the resistome and microbiota of H and U WW. Our results present considerable targets for AMR related risk assessment of WW.

Footnotes

  • Figure 5 modified (Figure distorted through PDF conversion); author affiliations updated; minor changes throughout text for clarification; shortening of general discussion;

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted July 20, 2019.
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Classification of hospital and urban wastewater resistome and microbiota over time and their relationship to the eco-exposome
Elena Buelow, Andreu Rico, Margaux Gaschet, José Lourenço, Sean P. Kennedy, Laure Wiest, Marie-Cecile Ploy, Christophe Dagot
bioRxiv 697433; doi: https://doi.org/10.1101/697433
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Classification of hospital and urban wastewater resistome and microbiota over time and their relationship to the eco-exposome
Elena Buelow, Andreu Rico, Margaux Gaschet, José Lourenço, Sean P. Kennedy, Laure Wiest, Marie-Cecile Ploy, Christophe Dagot
bioRxiv 697433; doi: https://doi.org/10.1101/697433

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