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The Aging Microenvironment Shapes Alveolar Macrophage Identity in Aging

Alexandra C. McQuattie-Pimentel, Ziyou Ren, Nikita Joshi, Satoshi Watanabe, Thomas Stoeger, Monica Chi, Ziyan Lu, Lango Sichizya, Raul Piseaux, Ching-I Chen, Saul Soberanes, Paul A. Reyfman, James M. Walter, Kishore R. Anekalla, Jennifer M. Davis, Kathryn A. Helmin, Constance E. Runyan, Hiam Abdala-Valencia, Kiwon Nam, Angelo Y. Meliton, Deborah R. Winter, Richard I. Morimoto, Gökhan M. Mutlu, Ankit Bharat, Harris Perlman, Cara J. Gottardi, Karen M. Ridge, Navdeep S. Chandel, Jacob I. Sznajder, William E. Balch, Benjamin D. Singer, Alexander V. Misharin, GR Scott Budinger
doi: https://doi.org/10.1101/717033
Alexandra C. McQuattie-Pimentel
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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Ziyou Ren
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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Nikita Joshi
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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Satoshi Watanabe
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
8Kanazawa University Graduate School of Medical Sciences, Department of Respiratory Medicine, Kanazawa, Ishikawa 920-8641, Japan
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Thomas Stoeger
2Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL, 60208, USA
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Monica Chi
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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Ziyan Lu
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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Lango Sichizya
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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Raul Piseaux
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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Ching-I Chen
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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Saul Soberanes
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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Paul A. Reyfman
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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James M. Walter
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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Kishore R. Anekalla
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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Jennifer M. Davis
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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Kathryn A. Helmin
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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Constance E. Runyan
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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Hiam Abdala-Valencia
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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Kiwon Nam
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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Angelo Y. Meliton
3Department of Medicine, Division of Pulmonary and Critical Care Medicine, University of Chicago Hospitals, Chic
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Deborah R. Winter
4Department of Medicine, Division of Rheumatology, Northwestern University, Chicago, IL, 60611, USA
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Richard I. Morimoto
5Department of Molecular Biosciences, Rice Institute for Biomedical Research, Northwestern University, Evanston, IL, 60208, USA
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Gökhan M. Mutlu
3Department of Medicine, Division of Pulmonary and Critical Care Medicine, University of Chicago Hospitals, Chic
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Ankit Bharat
6Department of Surgery, Division of Thoracic Surgery, Northwestern University, Chicago, IL, 60611, USA
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Harris Perlman
4Department of Medicine, Division of Rheumatology, Northwestern University, Chicago, IL, 60611, USA
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Cara J. Gottardi
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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Karen M. Ridge
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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Navdeep S. Chandel
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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Jacob I. Sznajder
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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William E. Balch
7The Scripps Research Institute Department of Chemical Physiology, La Jolla, CA, 10550, USA
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Benjamin D. Singer
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
5Department of Molecular Biosciences, Rice Institute for Biomedical Research, Northwestern University, Evanston, IL, 60208, USA
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Alexander V. Misharin
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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  • For correspondence: s-buding@northwestern.edu a-misharin@northwestern.edu
GR Scott Budinger
1Department of Medicine, Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, IL, 60611, USA
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  • For correspondence: s-buding@northwestern.edu a-misharin@northwestern.edu
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Abstract

A dysfunctional response to inhaled pathogens and toxins drives a substantial portion of the susceptibility to acute and chronic lung disease in the elderly. We used transcriptomic profiling combined with genetic lineage tracing, heterochronic adoptive transfer, parabiosis and treatment with metformin to show that the lung microenvironment defines the phenotype of long-lived alveolar macrophages during aging. While tissue-resident alveolar macrophages persist in the lung without input from monocytes over the lifespan, severe lung injury results in their replacement with monocyte-derived alveolar macrophages. These monocyte-derived alveolar macrophages are also shaped by the microenvironment both during aging and in response to a subsequent environmental challenge to become transcriptionally and functionally similar to tissue-resident alveolar macrophages. These findings show that changes in alveolar macrophage phenotypes during injury and aging are not cell autonomous but instead are shaped by changes in the aging lung microenvironment.

Footnotes

  • 1. Minor update on figure 3 to align panels better. 2.Change typo of name in acknowledgement (change "B.D.J to B.D.S")

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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The Aging Microenvironment Shapes Alveolar Macrophage Identity in Aging
Alexandra C. McQuattie-Pimentel, Ziyou Ren, Nikita Joshi, Satoshi Watanabe, Thomas Stoeger, Monica Chi, Ziyan Lu, Lango Sichizya, Raul Piseaux, Ching-I Chen, Saul Soberanes, Paul A. Reyfman, James M. Walter, Kishore R. Anekalla, Jennifer M. Davis, Kathryn A. Helmin, Constance E. Runyan, Hiam Abdala-Valencia, Kiwon Nam, Angelo Y. Meliton, Deborah R. Winter, Richard I. Morimoto, Gökhan M. Mutlu, Ankit Bharat, Harris Perlman, Cara J. Gottardi, Karen M. Ridge, Navdeep S. Chandel, Jacob I. Sznajder, William E. Balch, Benjamin D. Singer, Alexander V. Misharin, GR Scott Budinger
bioRxiv 717033; doi: https://doi.org/10.1101/717033
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The Aging Microenvironment Shapes Alveolar Macrophage Identity in Aging
Alexandra C. McQuattie-Pimentel, Ziyou Ren, Nikita Joshi, Satoshi Watanabe, Thomas Stoeger, Monica Chi, Ziyan Lu, Lango Sichizya, Raul Piseaux, Ching-I Chen, Saul Soberanes, Paul A. Reyfman, James M. Walter, Kishore R. Anekalla, Jennifer M. Davis, Kathryn A. Helmin, Constance E. Runyan, Hiam Abdala-Valencia, Kiwon Nam, Angelo Y. Meliton, Deborah R. Winter, Richard I. Morimoto, Gökhan M. Mutlu, Ankit Bharat, Harris Perlman, Cara J. Gottardi, Karen M. Ridge, Navdeep S. Chandel, Jacob I. Sznajder, William E. Balch, Benjamin D. Singer, Alexander V. Misharin, GR Scott Budinger
bioRxiv 717033; doi: https://doi.org/10.1101/717033

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