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A flexible pipeline combining clustering and correction tools for prokaryotic and eukaryotic metabarcoding

View ORCID ProfileMiriam I. Brandt, Blandine Trouche, Laure Quintric, View ORCID ProfilePatrick Wincker, View ORCID ProfileJulie Poulain, View ORCID ProfileSophie Arnaud-Haond
doi: https://doi.org/10.1101/717355
Miriam I. Brandt
1MARBEC, Ifremer, Univ. Montpellier, IRD, CNRS, Sète, France
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  • ORCID record for Miriam I. Brandt
  • For correspondence: sarnaud@ifremer.fr miriam.isabelle.brandt@gmail.com
Blandine Trouche
2Univ. Brest, CNRS, Ifremer, Laboratoire de Microbiologie des Environnements Extrêmes, Plouzané, France
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Laure Quintric
3Ifremer, Cellule Bioinformatique, Brest, France
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Patrick Wincker
4Génomique Métabolique, Génoscope, Institut François Jacob, CEA, CNRS, Univ. Evry, Université Paris-Saclay, 91057 Evry, France
5Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/ Tara
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Julie Poulain
4Génomique Métabolique, Génoscope, Institut François Jacob, CEA, CNRS, Univ. Evry, Université Paris-Saclay, 91057 Evry, France
5Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/ Tara
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Sophie Arnaud-Haond
1MARBEC, Ifremer, Univ. Montpellier, IRD, CNRS, Sète, France
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  • ORCID record for Sophie Arnaud-Haond
  • For correspondence: sarnaud@ifremer.fr miriam.isabelle.brandt@gmail.com
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Article Information

doi 
https://doi.org/10.1101/717355
History 
  • February 4, 2020.

Article Versions

  • Version 1 (August 1, 2019 - 11:02).
  • Version 2 (December 30, 2019 - 05:50).
  • You are viewing Version 3, the most recent version of this article.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.

Author Information

  1. Miriam I. Brandt1,#,
  2. Blandine Trouche2,
  3. Laure Quintric3,
  4. Patrick Wincker4,5,
  5. Julie Poulain4,5 and
  6. Sophie Arnaud-Haond1,#
  1. 1MARBEC, Ifremer, Univ. Montpellier, IRD, CNRS, Sète, France
  2. 2Univ. Brest, CNRS, Ifremer, Laboratoire de Microbiologie des Environnements Extrêmes, Plouzané, France
  3. 3Ifremer, Cellule Bioinformatique, Brest, France
  4. 4Génomique Métabolique, Génoscope, Institut François Jacob, CEA, CNRS, Univ. Evry, Université Paris-Saclay, 91057 Evry, France
  5. 5Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/ Tara
  1. ↵#Correspondence
    : sarnaud{at}ifremer.fr, miriam.isabelle.brandt{at}gmail.com
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Posted February 04, 2020.
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A flexible pipeline combining clustering and correction tools for prokaryotic and eukaryotic metabarcoding
Miriam I. Brandt, Blandine Trouche, Laure Quintric, Patrick Wincker, Julie Poulain, Sophie Arnaud-Haond
bioRxiv 717355; doi: https://doi.org/10.1101/717355
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A flexible pipeline combining clustering and correction tools for prokaryotic and eukaryotic metabarcoding
Miriam I. Brandt, Blandine Trouche, Laure Quintric, Patrick Wincker, Julie Poulain, Sophie Arnaud-Haond
bioRxiv 717355; doi: https://doi.org/10.1101/717355

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