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A low-cost, open source, self-contained bacterial EVolutionary biorEactor (EVE)

Vishhvaan Gopalakrishnan, Nikhil P. Krishnan, Erin McClure, Julia Pelesko, Dena Crozier, Drew F.K. Williamson, Nathan Webster, Daniel Ecker, Daniel Nichol, Jacob G Scott
doi: https://doi.org/10.1101/729434
Vishhvaan Gopalakrishnan
1Lerner College of Medicine, Cleveland Clinic, Cleveland, Ohio, United States of America
2Case Western Reserve University School of Medicine, Cleveland, Ohio, United States of America
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  • For correspondence: vxg135@case.edu
Nikhil P. Krishnan
2Case Western Reserve University School of Medicine, Cleveland, Ohio, United States of America
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Erin McClure
3Department of Translational Hematology and Oncology Research, Cleveland Clinic, Cleveland, Ohio, United States of America
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Julia Pelesko
4Department of Physics, Case Western Reserve University, Cleveland, Ohio, United States of America
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Dena Crozier
1Lerner College of Medicine, Cleveland Clinic, Cleveland, Ohio, United States of America
2Case Western Reserve University School of Medicine, Cleveland, Ohio, United States of America
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Drew F.K. Williamson
3Department of Translational Hematology and Oncology Research, Cleveland Clinic, Cleveland, Ohio, United States of America
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Nathan Webster
3Department of Translational Hematology and Oncology Research, Cleveland Clinic, Cleveland, Ohio, United States of America
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Daniel Ecker
5Hawken School, Gates Mills, Ohio, United States of America
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Daniel Nichol
6Centre for Evolution and Cancer, The Institute of Cancer Research, London, United Kingdom
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Jacob G Scott
3Department of Translational Hematology and Oncology Research, Cleveland Clinic, Cleveland, Ohio, United States of America
4Department of Physics, Case Western Reserve University, Cleveland, Ohio, United States of America
7Department of Radiation Oncology, Cleveland Clinic, Cleveland, Ohio, United States of America
8Center for Proteomics and Bioinformatics, Case Western Reserve University School of Medicine, Cleveland, Ohio, United States of America
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  • For correspondence: vxg135@case.edu
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ABSTRACT

Recently, a concerted effort has been made to study the evolution of drug resistance in organisms at increasingly smaller time scales and in a high-throughput manner. One effective approach is through the use of a bioreactor, such as a morbidostat – a device that can continuously culture bacteria and monitor this growth in real time. These devices can be technically challenging and expensive to implement for scientists, let alone students or teachers who seek an innovative and intuitive way of studying evolution. We aim to provide a flexible and open source automated continuous culture device framework to study biological concepts such as population dynamics and evolution; a framework that is capable of replicating morbidostat, chemostat, and turbidostat functionality. Within the educational environment, our goal is to foster interaction and interest between the engineering and biological fields by allowing teachers and students to build their own systems and design experiments on the proposed open framework. We present a continuous culture device designed for bacterial culture that is easily and inexpensively constructed, lends itself to evolution experiments, and can be used both in the academic and educational environments.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted August 09, 2019.
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A low-cost, open source, self-contained bacterial EVolutionary biorEactor (EVE)
Vishhvaan Gopalakrishnan, Nikhil P. Krishnan, Erin McClure, Julia Pelesko, Dena Crozier, Drew F.K. Williamson, Nathan Webster, Daniel Ecker, Daniel Nichol, Jacob G Scott
bioRxiv 729434; doi: https://doi.org/10.1101/729434
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A low-cost, open source, self-contained bacterial EVolutionary biorEactor (EVE)
Vishhvaan Gopalakrishnan, Nikhil P. Krishnan, Erin McClure, Julia Pelesko, Dena Crozier, Drew F.K. Williamson, Nathan Webster, Daniel Ecker, Daniel Nichol, Jacob G Scott
bioRxiv 729434; doi: https://doi.org/10.1101/729434

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